Pairwise Alignments

Query, 412 a.a., mechanosensitive ion channel family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  370 bits (949), Expect = e-107
 Identities = 182/384 (47%), Positives = 261/384 (67%), Gaps = 4/384 (1%)

Query: 28  LIAAISIAIHLVLHRGVLLWLKRHTHHEQSVWRNALFKEHLFSRVALLIQGVVIAVQTQL 87
           L+AAIS   + ++HRGV+  +       +  W +   +  +  ++A+L+  +V+ +   +
Sbjct: 7   LVAAIS---YFIMHRGVIRAVNMVILRSRVTWDDVFMRYKVLEKLAMLVPAIVLNLLVPI 63

Query: 88  WLSPNTFAYDVLHTLTSLWIVVFGMLATYSVLNVLELLISRTQVGKNLPTRGILQSIKLI 147
            L+ +     ++  L S+W+V+  + A Y+ L+ +  +    +V + LP +  +Q  KL 
Sbjct: 64  TLTEHPVLSSLVDRLLSIWLVILMIRAIYAGLDAVNEISDINEVSRRLPVKSFVQLFKLF 123

Query: 148 VFIIAALFFTSILIGKSPVILLSGLGAMTAVFMLVFKDPILGLVAGVQLSANKMLSVGDW 207
           +F +  +   S+L  +SPV  LSGLG  T   MLVF+D ILG VAG+QL+AN+M+S GDW
Sbjct: 124 LFFVGLIVCLSVLADQSPVYFLSGLGVATGFVMLVFRDTILGFVAGIQLAANRMVSKGDW 183

Query: 208 LEMPKYGADGSVIDISLTTVKVQNWDKTITTIPSYALISDSFKNWKGMQESGGRRIKRSI 267
           ++M KYGADG+V ++SLTTVKV+NWDKTIT IP+YAL+SD+F+NW+GM ESGGRRIKR++
Sbjct: 184 IQMDKYGADGAVEEVSLTTVKVRNWDKTITMIPAYALVSDAFRNWRGMSESGGRRIKRAV 243

Query: 268 LIDATSVHFLTEEEKQALKKAQLLEPYLVEKEQEISSYNQQKHWDLACRINGRRLTNIGS 327
            ID  S+ FLTE +++ L K   L+ Y   K  EI + N  K  DL   +NGR LTN+G+
Sbjct: 244 NIDINSIKFLTENDRKRLSKINCLKEYFPAKISEIQASN-AKVSDLDMMVNGRHLTNVGT 302

Query: 328 FRAYLERYLRTHPNIHQDMTLMVRQLAPTHDGISLEVYCFTSTTVWVEYERIQSDIFDHI 387
           FRAYL+ YL+ H  +H+DMTLMVRQLAPT +G+ +EVY FT+ T W  YE IQ+DIFDHI
Sbjct: 303 FRAYLQEYLQRHDKVHKDMTLMVRQLAPTTEGLPIEVYIFTNDTRWAFYEAIQADIFDHI 362

Query: 388 YAVLPEFDLRVSQAPTGNDFRALR 411
           +AVLPEF L+  QAPTGND R+L+
Sbjct: 363 FAVLPEFGLQAFQAPTGNDIRSLK 386