Pairwise Alignments

Query, 621 a.a., polysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., Polysaccharide biosynthesis protein CapD (NCBI) from Rhodospirillum rubrum S1H

 Score =  124 bits (312), Expect = 5e-33
 Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 29/304 (9%)

Query: 279 ITEKSVMVTGAGGSIGSELCRQILAQK---PKTLVLFELNEYNL------YTIDQELQAI 329
           +T + V++TG  GS+G  L R++L+ +   P+ + +   +E         Y +       
Sbjct: 2   LTGQRVLITGGTGSLGRVLVRRLLSGEMGTPERVTIMSRDEAKQNALRTSYLVSAGRHPT 61

Query: 330 KQNLKLNTKIVAA--LGSVQRENRVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNN 387
            + +  N +   A  +G V+  + V   +     + V++AAA K VP  E    E IR N
Sbjct: 62  DEIIYENFRRTLAFQIGDVRDRDAVSLALS--DADVVFNAAALKQVPTCEYFPYEAIRTN 119

Query: 388 VFGTLACANAAIEAG--VKNFTLISTDKAVRPTNIMGASKRMAELVLQALADKNSTTIFT 445
           V G         +    VK    ISTDKA +P N+MG +K + E +  +       T F 
Sbjct: 120 VEGPWNIITTIRDRRLPVKTVVGISTDKAAKPINVMGMTKALQERLFLSANLGCGQTRFI 179

Query: 446 MVRFGNVLGSSGSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQ 505
            VR+GNVL S GSVVPLF +QI AGGPVT+T PD+ R+ + + +A  L+  A   +  G+
Sbjct: 180 AVRYGNVLASRGSVVPLFHQQIAAGGPVTLTDPDMTRFLLSLNDAVDLIFSACRTALPGE 239

Query: 506 VFVLDMGEPVKIVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGEN 565
            +V  +    ++ D+A  +I              E  I IK  GLRPGEK +E ++  E 
Sbjct: 240 TYVPRVAS-ARVEDIALALI-------------GERAIPIKIIGLRPGEKSHEIMVSEEE 285

Query: 566 VEGT 569
              T
Sbjct: 286 ARRT 289