Pairwise Alignments

Query, 621 a.a., polysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., nucleoside-diphosphate sugar epimerase/dehydratase from Pseudomonas sp. BP01

 Score =  538 bits (1385), Expect = e-157
 Identities = 301/647 (46%), Positives = 420/647 (64%), Gaps = 36/647 (5%)

Query: 8   LLSAQRHHKRMITLLYDVFALMFSLYAAIALRL--DTLAFTFSFPEFLSMMTTVGVTLYC 65
           LL+  R HKR++ +L D+  +  +L+ A  +RL  D L   F    +L +   V V +  
Sbjct: 8   LLALPRRHKRLLQVLTDIVLIWAALWMAFLVRLGIDDLVNPFIDHGWLFLTAPV-VGIPL 66

Query: 66  FVRLGMYRAVLRYMMLPAIGYIFLSVIISAVTLALSGFF---FQAFIPRSVPFIYAGLAT 122
           F+R G+YRAV+RY    A+  I  ++ +S++ L    ++    Q  +PRS+ F Y  L+ 
Sbjct: 67  FIRFGLYRAVMRYFGTDALIAIAKAITLSSLILGFIIYWAGDHQHVVPRSITFNYWWLSL 126

Query: 123 LTLGGPRIFIRTIYYHYYKRQK---------------PNVFIYGAGSTGRDLAYALIQGD 167
           + +GG R+ +R  +   +                   P V IYGAG  G  L  AL    
Sbjct: 127 IMIGGLRLAMRQYFLGDWFAAAVQHVPFTSTNRTDGLPRVAIYGAGGAGNQLVAALRADK 186

Query: 168 EYHPVIFLDDDPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGKNTRIKLLER 227
              PV F+DDDP+ T ++I GL+V+     + + N     ++L+AI +  +  R ++L  
Sbjct: 187 ALRPVAFIDDDPSITDRVIAGLQVYRPEQLQDMINATGAQEILLAIPSSTRTRRREILNF 246

Query: 228 LSHWPIEIQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVT 287
           L  +P+ ++S+PS  D+A+GR K  D+Q++DIADLLGR  V     LL++ I  ++V+VT
Sbjct: 247 LEGYPLHVRSIPSFMDLASGRVKVDDIQEVDIADLLGRDAVPAQADLLERCIVAQTVLVT 306

Query: 288 GAGGSIGSELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQ 347
           GAGGSIGSELCRQIL Q PKTL+LF+ +E+NLY+I  EL+       L+ +++  LGSV+
Sbjct: 307 GAGGSIGSELCRQILGQAPKTLLLFDHSEFNLYSIVSELEQRISRESLSVRLLPMLGSVR 366

Query: 348 RENRVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFT 407
            ++++ ++M+A +V+TVYHAAAYKHVP+VE N+ EG+ NNV GTL  A AA++AGV NF 
Sbjct: 367 NQSQLLEIMKAWRVDTVYHAAAYKHVPMVEHNIAEGLLNNVIGTLHTAQAALQAGVANFV 426

Query: 408 LISTDKAVRPTNIMGASKRMAELVLQALA--------------DKNSTTIFTMVRFGNVL 453
           LISTDKAVRPTN+MG++KR+AE+ LQAL+               + + T FTMVRFGNVL
Sbjct: 427 LISTDKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGDSGRVSQVNKTRFTMVRFGNVL 486

Query: 454 GSSGSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGE 513
           GSSGSV+PLF KQI+AGGP+TVTHP I RYFM IPEAAQLVIQAG+M   G VFVLDMGE
Sbjct: 487 GSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGKGGDVFVLDMGE 546

Query: 514 PVKIVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGENVEGTSHQK 573
           PVKIV+LA++MIHL G     + R+  GDI I+FTGLRPGEKLYEELLIG+NV  T H  
Sbjct: 547 PVKIVELAEKMIHLSGFSVRSE-RNPMGDISIQFTGLRPGEKLYEELLIGDNVIATRHPM 605

Query: 574 IMTACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQ 620
           IM+A E+ L+WD ++D L +L       D   ++++L +  +GYSP+
Sbjct: 606 IMSATEDFLAWDTLKDTLRQLLAAVEVDDFTRVRQLLRETVSGYSPE 652