Pairwise Alignments

Query, 621 a.a., polysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., polysaccharide biosynthesis protein CapD (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (327), Expect = 9e-35
 Identities = 95/282 (33%), Positives = 147/282 (52%), Gaps = 32/282 (11%)

Query: 282 KSVMVTGAGGSIGSELCRQILAQ-KPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIV 340
           KS+++TG  GS G +  + IL +  PK L++   +E   Y + Q   A            
Sbjct: 5   KSILITGGTGSFGQKYTKTILERYSPKRLIILSRDELKQYEMQQIYNAPCMRY------- 57

Query: 341 AALGSVQRENRVKKLMQAHQ-VETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAI 399
             LG V+  +R   +MQA + V+ V HAAA K VP  E N +E I+ N+ G      AAI
Sbjct: 58  -FLGDVRDGDR---MMQAFKDVDYVIHAAAIKQVPAAEYNPMECIKTNIHGAENVIKAAI 113

Query: 400 EAGVKNFTLISTDKAVRPTNIMGASKRMAELVLQALAD--KNSTTIFTMVRFGNVLGSSG 457
              VK    +STDKA  P N+ GA+K  ++ +  A  +   +  T F+ VR+GNV+GS G
Sbjct: 114 ANKVKKVIALSTDKAANPINLYGATKLASDKLFVAGNNIVGDGETRFSAVRYGNVVGSRG 173

Query: 458 SVVPLFKKQIRAGG-PVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVK 516
           SVVP F+K I+ G   + +THPD+ R+++ + +    V++  +    G++FV  +   V+
Sbjct: 174 SVVPFFQKLIKEGAQSLPITHPDMTRFWITLQDGVDFVLKNFSRMQGGEIFVPKI-PSVR 232

Query: 517 IVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYE 558
           I DLA         + +  G S +        G+RPGEK++E
Sbjct: 233 ITDLA---------QAYGPGLSHD------IVGIRPGEKMHE 259