Pairwise Alignments

Query, 621 a.a., polysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., capsular polysaccharide biosynthesis protein capD (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  300 bits (767), Expect = 2e-85
 Identities = 200/572 (34%), Positives = 304/572 (53%), Gaps = 34/572 (5%)

Query: 72  YRAVLRYMMLPAIGYIFLSVIISAVTLALSGFFF--QAFIPRSVPFIYA---GLAT-LTL 125
           YR  +R+  L  +  +  S +I AV +A++ + F  Q  +  S   ++    G+ T + +
Sbjct: 75  YRNTIRFSQLKELWRLAGSALIKAVCIAMAIWLFLPQTGLHNSQKIVFVLFDGMLTFIAM 134

Query: 126 GGPRIFIRTIY---YHYYKRQKPNVFIYGAGSTGRDLAYALIQGDEYHPVIFLDDDPAKT 182
            G RI +  +Y    +   ++  ++ IYG       L   L+    Y  V F       +
Sbjct: 135 VGFRIQLILVYELLLNMLNKKNMHILIYGIDDKSVALKVRLMNSSHYKVVGFCIYGTGDS 194

Query: 183 GQIIFGLRVHHSSDFESLRNLYEPV---KMLIAINNIGKNTRIKLLERLSHWPIEIQSVP 239
            + +  L V+   D E    L        +L A     +    +LL+      ++    P
Sbjct: 195 IRRVADLPVYSFKDEECFNKLIHKKCIGGILFARYENTREEEDRLLQYCKRSGLKTLIAP 254

Query: 240 SVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAGGSIGSELCR 299
           S+ +     +    V+ + I DLLGR+ +  ++  +      K V+VTGA GSIGSELCR
Sbjct: 255 SISEADENGSFHQWVRPIKIEDLLGRSEIHINMEEVMTEFCGKVVLVTGAAGSIGSELCR 314

Query: 300 QILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQRENRVKKLMQAH 359
           Q+     K L++F+  E  L+ +  E +    +L      V  +G V+ + R++ + + +
Sbjct: 315 QLAQMNIKKLIMFDSAESPLHNVRLEFEKNYPDLDF----VPVIGDVRVKERLRMVFETY 370

Query: 360 QVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLISTDKAVRPTN 419
           Q + ++HAAAYKHVPL+E+N  E +  NV G+   A+ A+E G +   ++STDKAV PTN
Sbjct: 371 QPQIIFHAAAYKHVPLMEENPCEAVLVNVVGSRQVADMAVEYGAEKMIMVSTDKAVNPTN 430

Query: 420 IMGASKRMAELVLQALA------DKNSTTIFTMVRFGNVLGSSGSVVPLFKKQIRAGGPV 473
           +MG SKR+AE+ +Q+L            T F   RFGNVLGS+GSV+P FK+QI  GGPV
Sbjct: 431 VMGCSKRLAEIYVQSLGCAIREGKVKGHTKFITTRFGNVLGSNGSVIPRFKEQIENGGPV 490

Query: 474 TVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVKIVDLAKRMIHLMGMKEF 533
           TVTHPDIIR+FM IPEA +LV++A  M    ++FV +MG+ VKIVDLA RMI L G +  
Sbjct: 491 TVTHPDIIRFFMTIPEACRLVMEAATMGEGNEIFVFEMGKAVKIVDLATRMIELAGYR-- 548

Query: 534 CDGRSDEGDIEIKFTGLRPGEKLYEELLIG-ENVEGTSHQKIMTACEEKLSWDAMEDLLT 592
                   DIEI+FTGLRPGEKLYEE+L   EN   T ++KIM A      +  + D  T
Sbjct: 549 -----PGEDIEIEFTGLRPGEKLYEEVLSDKENTIPTENKKIMIAKVRHYEYTDILDTYT 603

Query: 593 ELDVCCHNFD----VECIKRILLDAPTGYSPQ 620
           E +    +      V+ +KR++ +  +  SP+
Sbjct: 604 EFEKLSRSVQIMDTVKLMKRVVPEFKSKNSPR 635