Pairwise Alignments

Query, 471 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  108 bits (269), Expect = 6e-28
 Identities = 115/507 (22%), Positives = 206/507 (40%), Gaps = 66/507 (13%)

Query: 11  SESRPDCIAVYENDRTISYENLASDIKKTAAKLVSLGVTSEDAVLVRSNNSYSFILLYFS 70
           S S P C+         +YE L + + + A+   +LG+   + V V +   +  +   F+
Sbjct: 31  SRSAPPCL---------TYEGLFNRVCRLASGFKALGLRPGERVAVIAEKRFDAVAAMFA 81

Query: 71  IHYVGAKFVNVAPDSDVSYVSFIEDKVNPKLFIEK------------------------- 105
           + + G  FV + P      +  I      K+ +                           
Sbjct: 82  VAHAGGVFVPINPVLKSPQIVHILADSAAKILVAPALRLALLDHTPPPSLTTLLRFGDPA 141

Query: 106 --SQDFIRNIDSYTFDNIF----PPQARGIAD-----IMFTSGTTGEPKGVLLSHKSLVL 154
             S D     +S   D +     P  A  + D       +TSG+TG PK V+++H++L+ 
Sbjct: 142 PASPDPPPGGESLDLDALAGAGDPIAAHPVVDDDPACFFYTSGSTGLPKAVVVTHRNLIA 201

Query: 155 ATEHIISHVKNTNEDVELLLMPLSHSFAMARMRTSLFAGGAIVVGCSFKQLKSVFKAIEF 214
             + + S + N  +D  L  +PL      +++ T+ FA GA  V   +   + V  A   
Sbjct: 202 GAQSVASRLDNRPDDRLLAALPLGFDAGFSQL-TTAFAVGAEAVLHDYLLPQDVITACAH 260

Query: 215 YKVTGLGLVPSAWSYITLMTKDLIRKYSEQLNFIEFGSAHFPFEDKKQVAEWFPNTNVVM 274
           +++TGL  VP  W+ +  +  D     +  L F+       P     ++    P   + +
Sbjct: 261 HRITGLTGVPPLWAQLARL--DWPPAATASLRFLASTGGAMPAAVLARLRALAPLARIHL 318

Query: 275 HYGLTEVSRATFIDFH--NDDINAVGHRYRGADFKIIDNKGAEVIEGEEGEIVFKAPWML 332
            YGLTE  R+T +D         +VG     A+  ++   G      E GEIV +  ++ 
Sbjct: 319 MYGLTEAFRSTTLDPERVGRKPGSVGRAVANAEVLVLHPDGGRCAPNEIGEIVHRGAFVA 378

Query: 333 DGYFENSQLTSDCF--VEGY----------FKTGDLG--RVVGDYLFLTGRLKEIINVGG 378
            GY+ + + T+  F  +  +            +GDLG     GD L + GR + +I   G
Sbjct: 379 KGYWNDPEGTARRFRPIPPHPGEPSRPGLAVWSGDLGWQDDEGD-LTIVGRSEGLIKTSG 437

Query: 379 KKVSPDQVEKVLSEALGVQECACAALSDANMGEVVQAYIVVKSGWDCENVISNIKETING 438
            +VSP ++E     +  +++     L D  +GE + A +V          +  ++  +  
Sbjct: 438 YRVSPTEIEAPAHASGLIEDAVAFGLPDPLLGERL-ALVVTAPPGGAPVDLDALRRHLRA 496

Query: 439 QLPMHMRPKKYSIVSALPKTVSGKVQR 465
           QLP ++ P   + V +LP+T SGK  R
Sbjct: 497 QLPAYLVPALLTQVDSLPRTASGKADR 523