Pairwise Alignments

Query, 471 a.a., long-chain fatty acid--CoA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 534 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  129 bits (325), Expect = 2e-34
 Identities = 96/359 (26%), Positives = 171/359 (47%), Gaps = 12/359 (3%)

Query: 122 FPPQARGIADIMFTSGTTGEPKGVLLSHKSLVLATEHIISHVKNT---NEDVELLLMPLS 178
           F P A  +A + +T GTTG  KG +L+H +++     + S + +     ED+ +  +P+ 
Sbjct: 178 FVPAANDLAALQYTGGTTGLSKGAMLTHGNMLANAAQVKSRIGSVITEGEDIFVAPLPIY 237

Query: 179 HSFA-MARMRTSLFAGGAIVVGCSFKQLKSVFKAIEFYKVTGLGLVPSAWSYITLMTKDL 237
           H +A M  +      GG  V+  + + +  + K +  Y  TG   + + +  +    +  
Sbjct: 238 HIYAFMVNLVLYFECGGCSVLIPNPRDISGLIKTLAKYPFTGFAGLNTLFVALCHQPEFK 297

Query: 238 IRKYSEQLNFIEFGSAHFPFEDKKQVAEWFPNTNVVMHYGLTEVSRATFIDFHN-DDINA 296
              +S     I  G+A         + +      +   YGL+E S    ++      I  
Sbjct: 298 ALDFSHLKITISGGTALTAAA--ANIWQQTTGNTISEGYGLSETSPVISLNAPGYQKIGT 355

Query: 297 VGHRYRGADFKIIDNKGAEVIEGEEGEIVFKAPWMLDGYFENSQLTSDCFV-EGYFKTGD 355
           +G    G + K++D  G EV +GE GE+  + P ++ GY+ N Q T++    +G+FKTGD
Sbjct: 356 IGKPVLGTEVKLLDENGNEVAQGEAGELAARGPQVMLGYWNNPQETANVMTADGFFKTGD 415

Query: 356 LGRVVGDYLF--LTGRLKEIINVGGKKVSPDQVEKVLSEALGVQECACAALSDANMGEVV 413
           +  ++ +  F  +  R K++I V G  V P++VE VL+    + ECA   + D + GE V
Sbjct: 416 IA-ILNEEGFHQIVDRKKDMIIVSGFNVYPNEVENVLASHPNIIECAVVGVKDEHSGEAV 474

Query: 414 QAYIVVK-SGWDCENVISNIKETINGQLPMHMRPKKYSIVSALPKTVSGKVQRYKLSSE 471
           +A++V+K    D E + + I      QL  +  PK    +  LPK+  GK+ R +L  +
Sbjct: 475 KAFVVLKDDSQDHEQMKTAILNFCREQLTAYKLPKLIEFMPQLPKSTVGKILRRELKHQ 533