Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., O-antigen export system permease protein RfbD from Pseudomonas fluorescens FW300-N2E2

 Score = 62.8 bits (151), Expect = 7e-15
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 36/214 (16%)

Query: 31  RSRYSRSKFGQTWLSITMFVQILCIGLIWSLIWRM---GVDD---YLPYVGVGHIIYLFY 84
           +SRY  S FG  W  +     IL   +I+S I R    GV+D   Y  Y+  G + +  +
Sbjct: 25  QSRYRNSLFGALWTVLNPLSMILVYTVIFSHIMRARLPGVEDGMAYSVYLCAGLLTWGLF 84

Query: 85  TQTINESTGIFVADAR---------------VYLNDRQPFMLSVGAHIYRNVLILLHNIP 129
            +    S G+F+ +A                V  N    F + +G  ++   L++    P
Sbjct: 85  AEITTRSQGMFLENANLLKKISFPRICLPVIVLFNAGINFAIILG--LFLGFLLITGRWP 142

Query: 130 TIFLLVIWSSSANFEFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQLIGLLMQLAF 189
            I LL +             V  L+L + F         +++  FRD+ QL G+ +Q  F
Sbjct: 143 GITLLAL-------------VPLLALQVMFAAGLGMLLGILNVFFRDVGQLFGICLQFWF 189

Query: 190 FVSPVMWKVSFLPEQYQNYVYINPFASLLELIRN 223
           +++P+++ ++ LP   Q  +  NP  +L++  +N
Sbjct: 190 WLTPIVYPMTILPPPIQQLLAFNPMTALMQSYQN 223