Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., O-antigen export system permease protein RfbD from Pseudomonas fluorescens FW300-N2E2

 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 49/221 (22%), Positives = 105/221 (47%), Gaps = 15/221 (6%)

Query: 14  SVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWSLI----WRMGVDD 69
           SV  N  ++++L    +  RY  S  G  W   T    ++    ++S++    W  G + 
Sbjct: 14  SVLINRILIYVLIRREVIGRYKGSMLGILWSFFTPVFMLVVYTFVFSVVFKARWSGGGES 73

Query: 70  YLPYVGV---GHIIYLFYTQTINESTGIFVADARVYLNDRQPF----MLSVGAHIYRNVL 122
              +  V   G +++  +++ +N + G+ +A+         P     ++S+GA ++   +
Sbjct: 74  KSEFALVLFAGLLVFNLFSECVNRAPGLVLANTNYVKKIVFPLETLPLVSLGAALFHMAV 133

Query: 123 ILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQLIG 182
            +L  +  +F +V++ +      + +  + L   +   L  S+F A IS   RD+ Q IG
Sbjct: 134 SVLAWL--VFYIVLFGTPP--VTALLLPVVLFPLVLLTLGISWFLASISVYLRDIGQFIG 189

Query: 183 LLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRN 223
           +++    F+SP+ + +S LP+ YQ  +  NP    +E++R+
Sbjct: 190 IIITAMLFLSPIFYPLSTLPQSYQVALQANPLTLPVEMVRD 230