Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., Probable O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter RfbD from Mycobacterium tuberculosis H37Rv

 Score =  105 bits (263), Expect = 8e-28
 Identities = 63/258 (24%), Positives = 129/258 (50%), Gaps = 4/258 (1%)

Query: 11  DIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWSLIWRMGVDDY 70
           D+V  F    +   LG   ++ RY RS  G  W++I      + +G ++S ++R+ + ++
Sbjct: 23  DLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLYSKLFRLELSEH 82

Query: 71  LPYVGVGHIIYLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRNVLILLHNIPT 130
           LPYV +G I++      I +   +FVA+  +      P  + V   ++R ++   HNI  
Sbjct: 83  LPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWRQMIFFAHNIVI 142

Query: 131 IFLLVIWSSSANFEFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQLIGLLMQLAFF 190
            F++ I            F+ +L+L     ++ S    +++TR+RD+  L+  ++QL FF
Sbjct: 143 YFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFF 202

Query: 191 VSPVMWKVSFLPEQ----YQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVAWTFIIG 246
           ++P++W    L  Q    + + V +NP    L+++R P++G       ++ ++  T +  
Sbjct: 203 MTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAPLLGAHQELRHWLVVLVLTVVGW 262

Query: 247 MVSYFSYKVLDKKVIFWV 264
           M++ F+ +    +V +WV
Sbjct: 263 MLAAFAMRQYRARVPYWV 280