Pairwise Alignments

Query, 590 a.a., polysaccharide deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., polysaccharide deacetylase family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 29/228 (12%)

Query: 334 LYQTFYVNKLQREVPIIMYHRFIRDDSEKGVHGTYLHVQQLEKHFQLLKKMGFETLTFKD 393
           L+   + + L +   ++ YH      SE     T +   +   H   L K GF+ +   D
Sbjct: 6   LFVCAWFSGLAQAAVVLQYHHV----SETSPRVTSVTPAEFRSHMDFLAKNGFKVVPLTD 61

Query: 394 LSEKGFIHRLQ-PGKRFIIITVDDGYRDNYDLLLPLLKKYQFKAVVYVVTGENFNRWDVE 452
           L  +  I R + P  R + I+ DDGY++  D  +P+LK+Y F   ++           V 
Sbjct: 62  LVAQ--IKRGEKPPLRAVAISFDDGYQNIADNAVPILKEYGFPYTLF-----------VS 108

Query: 453 VSDNPEKVVPLMSPEQVKALHDSGLVEIGGHTMTHPFLSKLSESEQ--------REEILR 504
           ++   E    +MS   +K L   G  EI  H+  H  L +  E E         + ++L+
Sbjct: 109 IAPMVEGHKGMMSEATLKQLASEG-AEIANHSYDHGHLVRRLEGEDESAWLLRIKTQLLQ 167

Query: 505 NKLELEALIGEPL-TSFAYPYGDHDATSKQLAQDLGYPFAVATNSGPL 551
            +  L  + GE      AYP+G+++A  + LA +LG   A    SG L
Sbjct: 168 TEAALIRIRGETTQPMLAYPFGEYNAALQSLASELGM-VAFGQQSGAL 214