Pairwise Alignments

Query, 590 a.a., polysaccharide deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., polysaccharide deacetylase (RefSeq) from Shewanella loihica PV-4

 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 25/202 (12%)

Query: 347 VPIIMYHRFIRDDSEKGVHGTYLHVQQLEKHFQLLKKMGFETLTFKDLSEKGFIHRLQPG 406
           V I+ YH  + +D+ K    T +   Q  +    L++ GF+      + E       +  
Sbjct: 20  VVILQYHH-VSEDTPKV---TSVIPAQFREQMSYLRENGFKVKPLTHVVE-AIKQGRELA 74

Query: 407 KRFIIITVDDGYRDNYDLLLPLLKKYQFKAVVYVVTGENFNRWDVEVSDNPEKVVPLMSP 466
            + + IT DDGY++  D   P+LK++ +   +++            +     K   +MS 
Sbjct: 75  DKTVAITFDDGYQNIADTAHPILKEFGYPYTIFI-----------SIDPIERKHKNVMSW 123

Query: 467 EQVKALHDSGLVEIGGHTMTHPFLSKLSESEQR--------EEILRNKLELEALIGEPLT 518
             +K L D G V +  H+  H  L +    E          E +L  + E+EA  G+ + 
Sbjct: 124 ATLKRLSDEG-VTLANHSWGHEHLIRRLHGEDEQTWLTRITENLLATEAEIEAKTGQSVK 182

Query: 519 SFAYPYGDHDATSKQLAQDLGY 540
             AYPYG+++   + L Q LG+
Sbjct: 183 MLAYPYGEYNTAIETLVQKLGF 204