Pairwise Alignments

Query, 590 a.a., polysaccharide deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., polysaccharide deacetylase (RefSeq) from Shewanella sp. ANA-3

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 25/202 (12%)

Query: 347 VPIIMYHRFIRDDSEKGVHGTYLHVQQLEKHFQLLKKMGFETLTFKDLSEKGFIHRLQPG 406
           V I+ YH      SE     T +   Q  +  Q L   GF+ +    + E     +  P 
Sbjct: 20  VVILQYHHV----SETTPAATSVTPAQFREQMQFLADDGFKVIPLSQVVEAIKNKQDLPA 75

Query: 407 KRFIIITVDDGYRDNYDLLLPLLKKYQFKAVVYVVTGENFNRWDVEVSDNPEKVVPLMSP 466
           K  + IT DDGYR       P+LK++ F   ++V            +    +K   +M+ 
Sbjct: 76  KT-VAITFDDGYRSIATTAHPILKEFGFPYTLFVA-----------IEPIKQKFTEMMAW 123

Query: 467 EQVKALHDSGLVEIGGHTMTHPFLSKLSESEQREE----ILRNKLELEALI----GEPLT 518
           E +  L   G  +I  H+  H  L +  ++E + +    I  N L+ E  I    G+   
Sbjct: 124 EDLIKLSKEG-ADIANHSWAHEHLIRKLDNESQSQWLARIKANILDTENAIREATGQNFK 182

Query: 519 SFAYPYGDHDATSKQLAQDLGY 540
             AYPYG+++   + +  D G+
Sbjct: 183 MLAYPYGEYNQAIQDMLTDNGF 204