Pairwise Alignments

Query, 349 a.a., lipopolysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., lipopolysaccharide heptosyltransferase I from Pseudomonas stutzeri RCH2

 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 24/290 (8%)

Query: 31  KTAVIRHAALGDQVIVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLADKTVI----MK 86
           K  +++ ++LGD V   P L +A++  P      V    +        A   VI     +
Sbjct: 2   KVLLVKTSSLGDVVHTLPALTDAQRALPGIRFDWVVEEGFAEIPAWHPAVAQVIPVAIRR 61

Query: 87  SRDDSKQLSLRQKWQDYNQLEAQ---DIIFDVAGTNRSYWMTLLTKAK---LKVGFPYKP 140
            R    Q     +WQ +     +   D++ D  G  +S W+T   KA    L      +P
Sbjct: 62  WRKHPLQTLRNGEWQRFKARLREGRYDLVIDAQGLLKSAWLTRYVKAPVAGLNRESAREP 121

Query: 141 FLCGTLYNLAVFRSDFQPEVECMLDMLK-ILGHNPSYPL-----DFAYPDNRQICDHAAP 194
            +    Y+    R    P  +  L+ ++ +     +YPL     D+     +       P
Sbjct: 122 -IAARFYD----RCYAVPRDQHALERVRQLFAQALAYPLPQDVADYGLDREQMAAPSDQP 176

Query: 195 YIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFEKGEYLQDLADNGSL 254
           Y+++  G +   K   +   R + E+       ++   L   N  EK    + ++   + 
Sbjct: 177 YLLFLHGTTWPSKHWPEAYWRELAERMSDFGWAIR---LPWGNAEEKARAERIVSGIANA 233

Query: 255 TIQPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYATVPFR 304
            + P L L  +   IA A   +A DTG+ ++A +   P++ ++  T+P R
Sbjct: 234 AVLPKLNLAGVARVIAGARACVAVDTGLGHLAAALDVPSISLYGPTLPGR 283