Pairwise Alignments

Query, 349 a.a., lipopolysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., glycosyl transferase family 1 from Burkholderia phytofirmans PsJN

 Score = 50.1 bits (118), Expect = 8e-11
 Identities = 62/332 (18%), Positives = 135/332 (40%), Gaps = 31/332 (9%)

Query: 27  LAVKKTAVIRHAALGDQVIVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDL--ADKTVI 84
           ++VKK  ++R ++LGD V   P + + R+  P A+I  +   +++ G    +    + + 
Sbjct: 1   MSVKKILIVRVSSLGDVVHNMPVIADIRRRHPEAQIDWLVEESFV-GLVQLVTGVHRAIP 59

Query: 85  MKSRDDSKQLSLRQKWQDYNQL------EAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPY 138
           +  R   K++     W++          E  D++ D  G  ++ W+  + +  L VG   
Sbjct: 60  VSLRRWRKRILSVANWREIGAFRRALAAEHYDLVIDCQGLIKTAWVASMARGTL-VGLAN 118

Query: 139 KPFLCGTLYNLAVF---RSDFQPEVECMLDMLKILG-------HNPSYPLDFAYPDNRQI 188
           +    G  + +  F   R   +P    +    +++          P+  +DF     R  
Sbjct: 119 RTDGAGFEWPVRFFYDKRVPIEPRTHVVERTRQLVAAALNDPPPQPTDDIDFGIDTGRAA 178

Query: 189 -------CDHAAPYIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFEK 241
                   +   PY+V+    S+  K         + +  +++  +   + L   +E E+
Sbjct: 179 LALSEANLNLPVPYVVFVHATSRADKQWPDTAWIELGQSLVRRGAS---IVLPWGSEEER 235

Query: 242 GEYLQDLADNGSLTI-QPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYAT 300
               +   + G+  I  P L L  +V  I  A   +  DTG+ ++A +   PTV ++   
Sbjct: 236 ATSERLAKEFGAAAIVPPRLSLPAVVGLIEGAAATVGVDTGLVHIAAALKRPTVELYNFA 295

Query: 301 VPFRYTPLYEAHTIVMNANGEKPSTEQITSAI 332
             +R    +  + + +   G+ P+ +Q+ SA+
Sbjct: 296 TAWRTGGYWSPNVVNLGTAGQPPTLQQVKSAL 327