Pairwise Alignments

Query, 527 a.a., capsular biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  429 bits (1103), Expect = e-124
 Identities = 235/524 (44%), Positives = 323/524 (61%), Gaps = 5/524 (0%)

Query: 1   MFLIMSGAYVGQELESEFGRIPPSFLPLGNRRLFQHQVALAPQGVKVYLSLPESYVVSEI 60
           M+LI S A V  EL+SEFG +PP FLP+GN+RLF HQ+AL P G +  ++LPE +     
Sbjct: 1   MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPY 60

Query: 61  DLQWLEQNQVTIIATPDGLSLGASLVAALNISGHSLNAPLHILYGDTLFNQLPVGDDIVS 120
           D Q L+   V ++  P  LSLG S+V AL     + + PL+IL+GDTLF+ LP   D + 
Sbjct: 61  DSQSLKDYGVELLYLPPTLSLGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLG 120

Query: 121 VSTAKDSYNWAVLTNDDVDWLQDANTPMSHESQRIIDGYFKFSHPRELVRCITQSEWKFI 180
           +S  +D+YNWA         L+  +  +   S+ I +G+F FS PR L+R ITQ++  FI
Sbjct: 121 LSQVEDNYNWAEFDAQS-GTLRPYHAELRPSSELISNGFFSFSAPRTLIRYITQAKGDFI 179

Query: 181 AGLNRYHKSVGLSAVNSIGWLDFGHVNTYYHSKAEFTTQRAFNELTITAKWIEKSSIKNQ 240
           AGLN Y    GL+ +    W DFGH +TYY SK+  TTQRAFN + I  + ++K S    
Sbjct: 180 AGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKH 239

Query: 241 KIAAEAYWFDNLPMAMRGFIPQYLGSQNSEGKISYRLEYLYLTALNELFVFSRLPSQIWQ 300
           K+AAEA W+ +LP  MRG+IPQ LG   S     Y +EYL+LTALNEL+VFS+LP+  W+
Sbjct: 240 KLAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWR 299

Query: 301 KILASAVEFLSLCLEQAVEPNAPINTLDILFADKTALRLNEFCAARHITLEDQWQFAGQ- 359
           K+L +  +FL      +V   A   TL  LF DKT  RL +F +   I++  + +  G  
Sbjct: 300 KVLKACCQFLKDASSYSV---ADAQTLSGLFMDKTLSRLEDFASQSGISVAQENRINGAL 356

Query: 360 DISLAQILRDSQKHLPDGKPLLGVLHGDFCFSNILYDFRANKIKTIDPRGMTPDGQKTLY 419
             SL ++ R S+++LP       +LHGDFCFSNILYDFR   IK IDPRG+  + ++T++
Sbjct: 357 RPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIKVIDPRGLDGNDKQTIH 416

Query: 420 GDIRYDLAKLSHSILGLYDWIIAGYYHVEIADNAIELKIAEQSHHKETQQGFIELIEQTF 479
           G+  YD+AKL+HS+LGLYD IIAGY+  E     ++  IA     ++    F+ L+   F
Sbjct: 417 GNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEF 476

Query: 480 GLTAKNLYAMQIQLFLSMLPLHADDRRRQDALFANAFRLHQILL 523
            ++   LYAMQIQLFLSMLPLH+D   RQ     NA+RL+  LL
Sbjct: 477 AVSEAELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLL 520