Pairwise Alignments

Query, 527 a.a., capsular biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  493 bits (1268), Expect = e-144
 Identities = 250/530 (47%), Positives = 345/530 (65%), Gaps = 16/530 (3%)

Query: 1   MFLIMSGAYVGQELESEFGRIPPSFLPLGNRRLFQHQVALAPQGVKVYLSLPESYVVSEI 60
           MFLIMSGAYV ++L++EFG IPP+FLPLGN+RLFQHQ+   P+G  +YLSLP+SY + E+
Sbjct: 1   MFLIMSGAYVTEDLKAEFGTIPPAFLPLGNKRLFQHQIQKIPKGKSIYLSLPDSYKIPEV 60

Query: 61  DLQWLEQNQVTIIATPDGLSLGASLVAALNISGHSLNAPLHILYGDTLFNQLPVGDDIVS 120
           D  WL  + + II TP  LS+G ++V +LNI+    +  L IL+GDTL    P   DI++
Sbjct: 61  DNTWLAAHNINIIRTPVNLSIGEAIVTSLNIAEEMSSNSLSILFGDTLLESYPTECDIIA 120

Query: 121 VSTAKDSYNWAVL-TNDDVDWLQDANTPMSHESQRIIDGYFKFSHPRELVRCITQSEWKF 179
            +   D+Y W+   T +++ W          E+++II GYF F+HP++L++CIT   W F
Sbjct: 121 TANTLDNYTWSTFSTKNEISW---------KENKQIICGYFNFTHPKKLIKCITIERWDF 171

Query: 180 IAGLNRYHKSVGLSAVNSIGWLDFGHVNTYYHSKAEFTTQRAFNELTITAKWIEKSSIKN 239
           I G+NRY+   GLS      W DFGH+NTYYHSK  FTTQRAFN+L I    I KSS  N
Sbjct: 172 INGVNRYNNENGLSNFKVKKWYDFGHINTYYHSKTAFTTQRAFNDLKINQTQITKSSKNN 231

Query: 240 QKIAAEAYWFDNLPMAMRGFIPQYLG-SQNSEGKISYRLEYLYLTALNELFVFSRLPSQI 298
            KI AEA WF+++P  +R + PQYLG +++  G   Y LEYL+  +LNELFVF+ +P+ I
Sbjct: 232 NKILAEANWFESIPPMLRVYTPQYLGCTEDKLGNYCYSLEYLHNISLNELFVFTEIPTSI 291

Query: 299 WQKILASAVEFLSLCLEQAVEPNAPINTLDILFADKTALRLNEFCAARHITLEDQWQF-A 357
           W  I    ++F+  C E     N      + L   KT  RLN++  +  I ++++W F  
Sbjct: 292 WDNIFTHCIKFIDYCKEVKNVKNEKF--FNELLTVKTKDRLNDYLLSEKIKIDEKWTFNK 349

Query: 358 GQDISLAQILRDSQKHLPDGKPLLGVLHGDFCFSNILYDFRANKIKTIDPRGMTPDGQKT 417
               S+  IL  S+++LP       ++HGDFCFSNILYDFRA+KIK IDPRG+T  GQ +
Sbjct: 350 NIKCSILDILDLSKQYLPAESKHATLMHGDFCFSNILYDFRADKIKVIDPRGITHQGQIS 409

Query: 418 LYGDIRYDLAKLSHSILGLYDWIIAGYYHVEIADNAIELKIAEQSHHK--ETQQGFIELI 475
           +YGDI YD+AKLSHS+LG+YDWIIAGY+   +     EL I   + +K  + +  F+  +
Sbjct: 410 IYGDILYDIAKLSHSVLGMYDWIIAGYHQTSVDHAKRELSITLPNDNKIDKIKSSFLNKV 469

Query: 476 EQTFGLTAKNLYAMQIQLFLSMLPLHADDRRRQDALFANAFRLHQILLRL 525
            + + LT  N+YAMQIQLF+SML LH+DD+ RQ  LFANAFR++ I+  L
Sbjct: 470 CKHYNLTPLNIYAMQIQLFISMLTLHSDDKYRQSGLFANAFRIYSIMKEL 519