Pairwise Alignments

Query, 247 a.a., capsular biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., conserved hypothetical protein from Pseudomonas syringae pv. syringae B728a

 Score = 53.1 bits (126), Expect = 5e-12
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 19/227 (8%)

Query: 1   MIVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTA 60
           M +I + G  S         P Y+ E +G+ L  H++    A       +    N     
Sbjct: 1   MNIILLTGRQSEALPDEGEYPHYLCEYNGKPLI-HTLIDNCAVLQPRRMICTFSNNDIAR 59

Query: 61  VFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPN 120
           + +R    Q+      +A +H  TRG A T  L  E+     +D    + + ++  F  +
Sbjct: 60  LHLRNMVPQMHPSASVLA-VHNITRGAACTALLASED-----IDNDDELLILSVSDFL-D 112

Query: 121 FVFPDI-----SQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLCSTGLY 175
               D+       H D  + +F      +SFA+ +     +VI+ AEKNPIS     G+Y
Sbjct: 113 IELQDVVRTFRQSHEDAGVVIFNSLHPRYSFARLD--SDCRVIEAAEKNPISSNAIAGVY 170

Query: 176 HFNRKEDYLEAYREYVARPSQEWERGELYIAPLYN--LLIQKGLNIH 220
            F     ++ A +E + + ++       YIAP  N  +L+QK +  +
Sbjct: 171 WFKSGSLFVSAAKEMIRKDAR--VNDNFYIAPALNELVLLQKRIGAY 215