Pairwise Alignments

Query, 319 a.a., wavE lipopolysaccharide synthesis family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  153 bits (387), Expect = 5e-42
 Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 3   FDQITFVIQGPITP--------SITSTSVRRLRSIFPGCQIIVSTWEGENTQDIEADLII 54
           F  IT V+QGP+           IT   +  +R+  PG +II+STWEG+N   +  DL++
Sbjct: 5   FSDITVVVQGPVQAYQGRDQQAGITQVCLDSIRTHLPGARIILSTWEGQNCTGLAPDLLL 64

Query: 55  YNKDPGSTIFVYSKRNDAIPVNINRQIVSTVSGLRHVKTKFAAKLRADNILNKRRVLEIF 114
            + DPG+ +  Y+ + +A  +N NRQIVST  GL+ V+T +A KLR+DN L     +   
Sbjct: 65  QHPDPGANVVAYNAQGEAQKLNFNRQIVSTCEGLKRVETPYAVKLRSDNYLTGHGFVTAL 124

Query: 115 EQFPLRKEGYAVLNNRLVCSNYFAKEFERGLSVPFFFSDFFQFGEVEDLLKVWDCDLYSD 174
           EQFP R +        +V +  + + +  G  V    SDFF FG  EDLLK+WD  L+ D
Sbjct: 125 EQFPARCDQDIRFTEPVVVNTSYFRRYAEGQRVIMHPSDFFHFGRTEDLLKIWDLPLFED 184

Query: 175 YDFKSTLSGKKQHKYYPNDSVNVEQKIWSNAARKLYPYELKDEHGDHFARQQSY---NFM 231
             F    +GK Q+   P    + EQ       R+L    L   H   F+  Q      FM
Sbjct: 185 RPFDPAQAGKAQYHGAPLTCPHAEQIYCDLWLRRLDDGFLPLAHRHQFSANQGERWDRFM 244

Query: 232 INNLIIVDGDELGLDVPQR 250
            +NL +++ ++LGL +  R
Sbjct: 245 ASNLRVLEPEQLGLGLIAR 263