Pairwise Alignments

Query, 319 a.a., wavE lipopolysaccharide synthesis family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 59.7 bits (143), Expect = 8e-14
 Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 44/271 (16%)

Query: 5   QITFVIQGPITPSITSTSV------RRLRSIFPGCQIIVSTWEGENTQDIEA----DLII 54
           ++TFV+QGP         +      R LR  FP  +II S  +      +E     DLI+
Sbjct: 3   ELTFVVQGPYFQHTDRNHISSDECFRTLRKYFPDSKIIYSRSDNV-VIPLEVLSLIDLIV 61

Query: 55  YNKDPGSTIFVYSKRNDAIPV--NINRQIVSTVSGLRHVKTKFAAKLRADNILNKRRVLE 112
              D G      +   ++IP   N+NRQI   V+GL  V++ +  K+R+D       +++
Sbjct: 62  CPDDVGPN---QAGCINSIPKFENVNRQIHGVVAGLELVESIYCCKVRSDFKFINNNLID 118

Query: 113 IFEQFPLRKEGYAVLNNRLVCSNYFAK----EFERGLSVPFFFSDFFQFGEVEDLLKVWD 168
           I     ++   +     RL   + +++    +F     V +  SDF   G  ED++K W 
Sbjct: 119 ILPSLLVKASRF---KGRLTILDIYSRTEYFKFGGRSYVDYHLSDFIFIGYSEDVIKYWK 175

Query: 169 CDLYSD-------YDFKSTLSGKKQHKYYPNDSVNVEQKIWSNAARKLYPYELKDEHGDH 221
            +L+ D       YD   T+      ++Y N   N+E     N+ R +    L++     
Sbjct: 176 GELFGDTDKNYLHYDDYRTVEQMLGRRFYKNYFSNIE----INSERNV---SLEECLLAK 228

Query: 222 FARQQSYNFMINNLIIVDGDELGLDVPQRLR 252
              Q+ +NF+          +LGLD+P+R +
Sbjct: 229 SRIQEDFNFL-------SFKKLGLDIPRRFK 252