Pairwise Alignments

Query, 269 a.a., formamidopyrimidine-DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase from Pseudomonas aeruginosa PA14

 Score =  291 bits (745), Expect = 1e-83
 Identities = 138/269 (51%), Positives = 193/269 (71%), Gaps = 1/269 (0%)

Query: 1   MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELK-QLEGQTILAIHRRAKYL 59
           MPELPEVE +R GI+P+L G  ++ +++R  +LRWPIP++L  +L GQ I+++ RRAKYL
Sbjct: 1   MPELPEVETTRRGIAPYLEGQRVERVIVRERRLRWPIPEDLDVRLSGQRIVSVERRAKYL 60

Query: 60  IIETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKRLRYNDPRRFGAWLWCAP 119
           ++    G+ I HLGMSGSLR+++   PA++H+HVD+ + SG  LRY DPRRFGA LW   
Sbjct: 61  LLGAEAGTLISHLGMSGSLRLVESGTPASRHEHVDIELASGMALRYTDPRRFGAMLWSLA 120

Query: 120 DESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMDNAAVVGVGNIYANESLFTS 179
              HE+L  LGPEPLT+AF  + + + +R + +AVK FIMDNA VVGVGNIYA+E+LF +
Sbjct: 121 PLEHELLRNLGPEPLTDAFAGQRLFELSRGRSMAVKPFIMDNAVVVGVGNIYASEALFAA 180

Query: 180 RLHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLKDFTQSDGKPGYFAQELQVYGK 239
            + P +PA S+S   +  L   IK++L +AI++GGTTL+DF   DG+PGYF QEL VYG+
Sbjct: 181 GIDPRKPAGSISKARYLRLAEEIKRILAIAIERGGTTLRDFVGGDGQPGYFQQELFVYGR 240

Query: 240 AKQPCPHCGEPLCEQKIAQRNTFFCPQCQ 268
             + C  CG  L E ++ QR + +CP+CQ
Sbjct: 241 GGEFCKVCGSTLREIRLGQRASVYCPRCQ 269