Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  281 bits (719), Expect = 5e-80
 Identities = 183/566 (32%), Positives = 298/566 (52%), Gaps = 36/566 (6%)

Query: 7   LSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYL 66
           LS  R    +L+++V+ L V++A            TL ++L N   DL  AK ++   ++
Sbjct: 6   LSISRRLWLILVVSVLMLFVLSA------------TLLRQLHN---DLYQAKAEKTM-HV 49

Query: 67  MMGVTAVKPLYESDKAGEN------QAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKP 120
           +   + +   Y+  +A         Q QA + +K++R+    YF+  D + V  +H    
Sbjct: 50  VQTASGILSFYQGLEAAGGMTREAAQQQALKEIKSLRYSQSDYFWINDLRPVMIMHPTNA 109

Query: 121 ELEGKNLYGMKDENGVAVIAGLIDASKT-GDGFLYFSWHKPTINAQAPKLGYAEYLPKWD 179
           +LEG++L  +KD +G AV   ++   K  G G + + W KP  +    K  Y +    W 
Sbjct: 110 KLEGQDLSTIKDPDGFAVFNEMVTLVKAQGAGMVNYRWPKPGASEPVKKTSYVQLFQPWG 169

Query: 180 WVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIA-P 238
           W+LG+G+Y+DDV    AEF+ Q         +   G+ + G+V  ++ + V + R I  P
Sbjct: 170 WILGSGVYVDDV---AAEFKTQ---------LWNAGMFIAGIVLIMVLLLVTIVRSIVRP 217

Query: 239 LQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEA 298
           L+  V ++ ++A+G  DLT  ++    DEI ++   FNAF+ KL  ++  ++ SA  +  
Sbjct: 218 LRAAVGAMASIASGESDLTRTLETHGNDEITELGTHFNAFVAKLRNVVGQLQHSAVALGQ 277

Query: 299 AAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAV 358
           A+ +L     QA  + +    + D V  AV E++   ++VA N    A  +  A SQ   
Sbjct: 278 ASTDLGSDAEQAQSRSEQQSQQMDLVATAVNEVTYGVQDVAKNAEHAASEMRDAESQAQQ 337

Query: 359 AQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIE 418
            Q  ++ ++  I  L + + Q    +  L+ ++ +I  VL+VI  IAEQTNLLALNAAIE
Sbjct: 338 GQINIDNSLRQIEHLSSTIGQAVQVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIE 397

Query: 419 AARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKT 478
           AARAGEQGRGFAVVADEVR LA RTQ ST EI  M+  L +    AV+ +  S    + T
Sbjct: 398 AARAGEQGRGFAVVADEVRLLAQRTQKSTAEIQSMIERLQKHSDAAVKVIGDSSRSSQLT 457

Query: 479 ALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESF 538
             ++ Q  +SL  IS+A+  ++ +    ASA  QQ+ V +DINQN+    Q+    + + 
Sbjct: 458 IEQANQAGQSLTSISQALRNLNSLNASIASATLQQTHVVDDINQNVTQAAQLSQSTALAA 517

Query: 539 KQTESVSASLSHSGQQMGTLVGHFKL 564
           +Q+ S S  L    +++ TL+  F++
Sbjct: 518 EQSTSASLHLRGLSEELNTLLKQFRV 543