Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  447 bits (1150), Expect = e-130
 Identities = 242/561 (43%), Positives = 356/561 (63%), Gaps = 4/561 (0%)

Query: 4   NLMLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQ 63
           ++ +S+   R KLLLL ++PL++I   VM+ ++Q     L   +  ++  L++ ++++LQ
Sbjct: 2   SISMSNYSLRNKLLLLAMVPLVLILTAVMSYSWQVESQALDDSVALFKEKLVNERQQQLQ 61

Query: 64  AYLMMGVTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELE 123
               + +  V         G+N       L+ +RF S GYFF YD QG N  HA  P LE
Sbjct: 62  EATQIALAVVD---HQISLGQN-GNINDALRPLRFGSAGYFFIYDYQGANVFHATNPALE 117

Query: 124 GKNLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLG 183
           G    GM D  G  ++ GLIDA+K G GF  + + KP +     K+GYA  +P  DW+LG
Sbjct: 118 GTPQIGMTDPQGTKIVVGLIDAAKRGGGFFNYVYPKPGVEGLVDKIGYAAPIPGKDWLLG 177

Query: 184 TGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVV 243
           TG Y+DD+D  V  +       ++++ ++   +S+V    T+IA+     R + P++ +V
Sbjct: 178 TGAYLDDIDAAVDTYSQSARQAMWEKAVAIFMMSLVLAFITLIAIWSAAHRMVKPIRAMV 237

Query: 244 SSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQEL 303
            SL  +A G GDLTAR+ V  +DEI ++  AFN F+DKL  ++ D+  +   V+ AA ++
Sbjct: 238 DSLNDIAKGEGDLTARLSVRGEDEIAELGIAFNQFVDKLQGIIRDVADTTGRVKQAAVDI 297

Query: 304 DQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEV 363
           D+QTS+ +++++ H  ETD+VV A+TEMS+TA EVA NT   A+A ++A   +A AQ  V
Sbjct: 298 DRQTSEMANQLNSHNNETDQVVTAITEMSSTAAEVAQNTTQVAEATQAATGDVAKAQACV 357

Query: 364 NLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAG 423
           + ++  I  L+++VN  +A +  LS+Q+ KI  VL VIG IAEQTNLLALNAAIEAARAG
Sbjct: 358 DTSLAEISNLMSQVNDAAANIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAG 417

Query: 424 EQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESV 483
           EQGRGFAVVADEVR+LASRTQ ST EI EML  LH+ VS AV++M+ SQ   +++   S 
Sbjct: 418 EQGRGFAVVADEVRNLASRTQASTLEINEMLTDLHRLVSSAVKTMDESQHSCQRSVEAST 477

Query: 484 QIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTES 543
            I ESL  ++ AV+ I+DM  Q A+AA +QS+V E+IN+N+ AIQ+IVN L  S ++  +
Sbjct: 478 AISESLGSVTSAVTAINDMSTQIAAAATEQSSVTEEINRNVYAIQEIVNALLVSSQEART 537

Query: 544 VSASLSHSGQQMGTLVGHFKL 564
           VS ++S  G Q+  LVG FK+
Sbjct: 538 VSRTVSTEGAQLSNLVGQFKV 558