Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  302 bits (773), Expect = 3e-86
 Identities = 182/526 (34%), Positives = 291/526 (55%), Gaps = 21/526 (3%)

Query: 47  LENYRTDLIDAKKKELQAYLMMGVTAVKPLYESDKAGE-----NQAQAKQILKAMRFDSD 101
           L N  T L+  K+  L A   + ++ +       ++GE      +A+A   L  +R+   
Sbjct: 42  LRNMDTVLVQEKEARLNALTDIAISIITDFQGKAQSGELSEADAKAKALSALDNLRYSGK 101

Query: 102 GYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGDGFLY-FSWHKP 160
            Y+F  D QG+   H    +L   N+ GM D NGV + A +I  ++  D  L  + W++P
Sbjct: 102 EYYFTIDRQGMMIQHPFAKKLVDTNVLGMADPNGVKLFAEMIRLTQNSDSALVNYMWNQP 161

Query: 161 TINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVG 220
             +A +PK+   +   +W W++GTGIY+DD+  Q  EF  Q              L V  
Sbjct: 162 DADAPSPKMSVVKRFSEWGWIVGTGIYVDDIAAQKQEFTWQY-------------LLVFL 208

Query: 221 LVF-TIIAVSVLVSRGIA-PLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAF 278
           LV+  ++A+ +++SR +  PLQ  + + + +A G  +LT R++   +DE+  V+  FNAF
Sbjct: 209 LVWGPVMALLLMISRSVTEPLQRTLMAFKNIAEGEANLTLRLEERGRDELSQVSVYFNAF 268

Query: 279 MDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREV 338
           + ++  L+  +R S +     +  L     QA+H  +    ET  V AA+ +MSATA EV
Sbjct: 269 VGRIQSLVISVRDSVDHSRQLSSSLSNVAHQAAHATNSMQQETQSVAAAINQMSATASEV 328

Query: 339 ASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVL 398
           A+N    A++ ++A+SQ       V  A+  + +L +E+ +TS     L   + +I Q+L
Sbjct: 329 AANAQLAAKSAKNADSQADSTNLVVTHAMGNVRQLSSELEETSEIAKALKVSSGEIGQIL 388

Query: 399 KVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALH 458
            VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LASRTQ ST+EI  ++ A+ 
Sbjct: 389 DVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQQSTQEINAIIEAIR 448

Query: 459 QGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAE 518
             V K   S+  ++++ + T  E+ Q+ ++L  I +A+  I+DM +Q A+A ++QSAV  
Sbjct: 449 GAVDKVNASVARARQQSDNTVDETAQVMDALGLIKQAIGQINDMNLQIATATDEQSAVIA 508

Query: 519 DINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL 564
           ++N+N+  I +I  E     +     S  ++   +QM  L+  FK+
Sbjct: 509 ELNENINRINEISVENLSKSETVGHTSDRIAEDSRQMAQLIAVFKV 554