Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  219 bits (559), Expect = 2e-61
 Identities = 173/585 (29%), Positives = 281/585 (48%), Gaps = 83/585 (14%)

Query: 7   LSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYL 66
           + SL  R+++LL   IP +   A+V+   +   L  +   +E       +  + ++++  
Sbjct: 1   MRSLSLRSQILL---IPCLAAGAIVLVALFAGTL--IHDRIE-------ETHRVQIKSVT 48

Query: 67  MMGVTAVKPLYESDKAG---ENQAQ--AKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPE 121
              V  +  L+    AG   E+QAQ  A+  ++A+RF  D YF+ Y   G    HA++P+
Sbjct: 49  ESTVKVIASLHAQVAAGALAEDQAQRLARDAVRAIRFAGDEYFYIYAYDGKLLAHAVRPD 108

Query: 122 LEGK-NLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDW 180
           LEG   L   +D  GV ++  LI+ +K G GF+ F W KP       KLGYAE    W W
Sbjct: 109 LEGTYTLKDTRDAKGVKIVEDLIEIAKRGGGFMPFVWPKPGQTEPVAKLGYAESFAPWGW 168

Query: 181 VLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQ 240
           ++GTG+Y+DDV+T+VA         L++  I         LVF  I + + V+R I   +
Sbjct: 169 MVGTGVYMDDVETEVAR-------TLWEIAIGGF----CALVFIAI-IGLGVTRSIG--R 214

Query: 241 HVVSSLQAVAA-GGGDLTARIKVES-QDEIGDVAKAFNAFMDKL--HPLMTDIRAS---- 292
            V    + + A   GDLT  +  +S  DE+  +A+    F  +L  +  M + R +    
Sbjct: 215 RVRGQAERMGAMAEGDLTTAVPADSANDELAAMARTLEVFRHRLIENRDMAEAREAEQRR 274

Query: 293 ----ANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVT-----------EMSATARE 337
               A  + A A+  D  T      + G  L+ ++   A++            +S+ A +
Sbjct: 275 RAEEAERIGALARAFDAATETTLQVVSGAALDLERDAGALSLSAENIGERSVTVSSAAEQ 334

Query: 338 VASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQV 397
            + N  + A + E   + I    ++V  +     + V E  +TSA +  L+  A +I  V
Sbjct: 335 ASVNVQTVAASTEELTASINEIARQVATSAQVAMDAVTETRKTSAHIHGLADAAQRIGAV 394

Query: 398 LKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNAL 457
           +++I DIA QTNLLALNA IEAARAG+ G+GFAVVA EV+SLA++T  +T EIGE + A+
Sbjct: 395 VELITDIASQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTARATGEIGEQIAAI 454

Query: 458 HQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVA 517
            Q  + AV                     +++  IS  ++ I D     A+A EQQ    
Sbjct: 455 QQATTVAV---------------------DAIEAISTVIATIGDSTTTIATAVEQQGMAT 493

Query: 518 EDINQNL-------VAIQQIVNELSESFKQTESVSASLSHSGQQM 555
            +I  N+         + Q +  ++E+   T   SAS+ ++  Q+
Sbjct: 494 REITSNVHQAAAGTALVSQSIGAIAETIATTRQASASVLNAAGQL 538