Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 736 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  222 bits (566), Expect = 4e-62
 Identities = 145/499 (29%), Positives = 253/499 (50%), Gaps = 65/499 (13%)

Query: 86  QAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLID- 144
           QA A +IL+  R+D   Y F  D++G + +H + PE+EGK++ G+KD  G A+ A +   
Sbjct: 100 QAGAIEILRRARYDGGEYLFIIDTKGRSVMHPLAPEMEGKDMSGVKDAKGTAMFAEMARL 159

Query: 145 ASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREA 204
           A   G GF  + W +      +PK+ Y   LP+WDWV+G+GIYIDDV+         R+A
Sbjct: 160 AVSQGSGFFAYEWQRGAQGTASPKISYVRRLPQWDWVIGSGIYIDDVEAAFT-----RQA 214

Query: 205 DLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIA-PLQHVVSSLQAVAAGGGDLTARIKVE 263
            ++  +++A+       V  ++ +S+++ RGIA PL  +   ++ +A+G  DL   I  E
Sbjct: 215 LIFAAVVAAV-------VAVLLGLSLVIGRGIAGPLVAMTGRMRKMASG--DLETAIPGE 265

Query: 264 S-----QDEIGDVAKAFNAFMDKLHP---LMTDIRASANTVEAAAQELDQQTSQAS---- 311
           +     +DE+G++A A   F + L     L  + R          Q++D+Q         
Sbjct: 266 ATADQRRDEVGEMAGALVVFRETLRDAKRLAEEHRHEEEQKHIRRQQVDEQIRAFEMTVV 325

Query: 312 HKMDGHCLETDKVVAAVT---------------EMSATAREVASNTYSTAQAIESANSQI 356
             +DG  +  D+ V + T               E++A+A   ++N  + A A E  ++ I
Sbjct: 326 RLLDG-LVSADQSVRSTTTRLVDGARDTMSEANEVAASAEHASANVETVASAAEELSASI 384

Query: 357 AVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAA 416
               ++V  +       V E  + +  + +L ++  +IT ++K+I DIA QTNLLALNA 
Sbjct: 385 QEIARQVEQSSGVARRAVEETGEATKGIAELEERVGQITDIVKLISDIASQTNLLALNAT 444

Query: 417 IEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGE 476
           IEAARAG+ G+GFAVVA+EV++LA++TQ +TK+I   +  + +  +++V           
Sbjct: 445 IEAARAGDAGKGFAVVAEEVKNLANQTQKATKDITGRIADVEEATTRSV----------- 493

Query: 477 KTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSE 536
                     E++  +SK +  IH++    ++A E+Q A   +I +N+       N +S 
Sbjct: 494 ----------EAIRDVSKVIGEIHEISASISAAVEEQGAATREIARNVDEAATGTNRVSS 543

Query: 537 SFKQTESVSASLSHSGQQM 555
           +  +  + +   +     M
Sbjct: 544 AIGRVRAAAEEANSEAGDM 562



 Score = 35.8 bits (81), Expect = 6e-06
 Identities = 41/252 (16%), Positives = 101/252 (40%), Gaps = 24/252 (9%)

Query: 233 SRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQD------EIGDVAKAFNAFMDKLHPLM 286
           ++GIA L+  V  +  +     D+ ++  + + +        GD  K F    +++  L 
Sbjct: 409 TKGIAELEERVGQITDIVKLISDIASQTNLLALNATIEAARAGDAGKGFAVVAEEVKNLA 468

Query: 287 TDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTA 346
              + +   +     ++++ T+++   +     +  KV+  + E+SA+         +  
Sbjct: 469 NQTQKATKDITGRIADVEEATTRSVEAIR----DVSKVIGEIHEISASISAAVEEQGAAT 524

Query: 347 QAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAE 406
           + I     + A     V+ AI  +     E N  +  +   S+      +VLK  G++AE
Sbjct: 525 REIARNVDEAATGTNRVSSAIGRVRAAAEEANSEAGDMERASRDLGHQAEVLK--GEVAE 582

Query: 407 QTNLLALNAAIEAARAGEQGRGFAVV--ADEVRSLASRTQNSTKEIGEMLNALHQGVSKA 464
                     ++  R G+ G   A+V  +D++ +  +      +++  ++N+++  V + 
Sbjct: 583 ---------FLQGIRLGD-GEDHALVTWSDDLATGDAHVDEDHRKLMALVNSVYGHVKQG 632

Query: 465 VQSMNISQERGE 476
                +    GE
Sbjct: 633 EAGAALEASFGE 644