Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  257 bits (656), Expect = 1e-72
 Identities = 155/489 (31%), Positives = 261/489 (53%), Gaps = 10/489 (2%)

Query: 77  YESDKAGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGV 136
           Y S    +    A Q + A +F  DG+F+  DS G    H+   ++      G    N  
Sbjct: 208 YVSTLKQDKLNSALQTVLAAKFGEDGHFWVQDSDGKILAHSQSSQI------GRITPNAA 261

Query: 137 AVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYA-EYLPKWDWVLGTGIYIDDVDTQV 195
                L       D F+      P  ++Q  ++ Y  + LP+W WV+GTG Y  ++    
Sbjct: 262 KAKQAL---GNQADAFVALPVTDPKTHSQETQIAYVRKILPEWGWVIGTGTYESNISAIE 318

Query: 196 AEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGD 255
               A  EA    ++  +I ++ + ++  +     L+++ IA +  + + +  ++ G  D
Sbjct: 319 QRLTAGTEAIFKQKIYRSIAIASLLIIIALAFCVFLLNKIIADMVMLKNRIDTLSTGDAD 378

Query: 256 LTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMD 315
           LT+R+ + S+DE+  +  + N+F+  L  +M +I  ++  +     +LD  +      + 
Sbjct: 379 LTSRLAITSKDELAAIGHSVNSFIGYLQAMMLEISHASQKITQGIGQLDSHSENNRQALS 438

Query: 316 GHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVN 375
            H  ET+ VV A+++M+A+A  VA +    A +   AN +   +   V+ A   +  L N
Sbjct: 439 KHSSETELVVTAISQMNASADAVAQSAGKMAASTHQANEEAKTSTLTVSDAAGSVQALAN 498

Query: 376 EVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 435
           E+N  S ++  +S+   +I  VL VI +IA+QTNLLALNAAIEAARAGEQGRGFAVVADE
Sbjct: 499 EMNSASQSIHTMSENTNQIISVLGVIKEIADQTNLLALNAAIEAARAGEQGRGFAVVADE 558

Query: 436 VRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKA 495
           VRSLASRTQ+ T +I ++L  L +    A Q M  +Q   ++    + ++  +L  ++ +
Sbjct: 559 VRSLASRTQSCTTQIEQILTTLRRDADTAEQLMLETQNSCQQVTQNTARVTSNLGAVTDS 618

Query: 496 VSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQM 555
           ++ ++D+G Q ASA+EQQS V  +I+QN+  I+ +   L ++ +QT   + SLS + QQ+
Sbjct: 619 IAELNDLGGQIASASEQQSVVTAEISQNMHTIEAMAQTLLQNGQQTLESTQSLSAANQQL 678

Query: 556 GTLVGHFKL 564
             +V  FKL
Sbjct: 679 SAMVRKFKL 687



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 40  LSTLQKELENYRTDLIDAK-KKELQAYLMMGVTAVKPLYESDKAGENQAQAKQILKAMRF 98
           + TL + + ++     +A  K+ L   + M    +  +YE++   +        L   ++
Sbjct: 59  VDTLSRSVNDFYQQSREANIKQALGDEIKMFRDVINRMYENNLTDDAAMMVYTFLNEYQW 118

Query: 99  DSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGD-GFLYFSW 157
            +  Y FAY++  +    +    +   N     DE G      ++ A+K+   GF  + +
Sbjct: 119 GNGRYLFAYNADTLENEASGMGGVSMGNSRDALDEKGNYYARDIVAAAKSKPIGFTSYFF 178

Query: 158 HKPTINAQAPKLGYAEYLPKWDWVLGTGIYI 188
             P+      KL  + Y    + V+ TG Y+
Sbjct: 179 SNPSTGQVEEKLSASFYFEPLNLVIATGEYV 209