Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  305 bits (780), Expect = 4e-87
 Identities = 186/525 (35%), Positives = 286/525 (54%), Gaps = 19/525 (3%)

Query: 47  LENYRTDLIDAKKKELQAYLMMGVTAVKPLYESDKAG---ENQAQAKQI--LKAMRFDSD 101
           L N    L+  K+ +L A   +G   +   YE+ +AG   E +A+   I  L A+R++ +
Sbjct: 36  LANIEEVLVKEKQAKLSALSDVGEKVISQFYEASQAGSMSEEEAKRNAIAALDALRYEGN 95

Query: 102 GYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGD-GFLYFSWHKP 160
            YF+  D QG+   HA   +L G N+ GMKD NGV +   ++  +   D   + + W++P
Sbjct: 96  EYFWTIDRQGIMVQHAFAKKLVGTNVLGMKDPNGVRLFEKMVTGTANSDYALIEYMWNRP 155

Query: 161 TINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVG 220
             +A +PK+   +    W W++GTGIY+DD+  ++  F       +Y  ++  I + +  
Sbjct: 156 NASAPSPKMSVVKRFTPWGWIVGTGIYVDDIQEEMQAF-------IYKYLLICIAVWL-- 206

Query: 221 LVFTIIAVSVLVSRGI-APLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFM 279
               +I +  ++SR I AP+   +++ + +A G GDLT R++   +DE+  VA +FN F+
Sbjct: 207 ---PVILILGVISRSISAPMADTIAAFENIARGEGDLTLRLEESGRDELKQVAASFNEFV 263

Query: 280 DKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVA 339
            K+  L+  + AS       A+ L   ++QAS        ET  V  A+ EMS  + EVA
Sbjct: 264 AKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVATAINEMSMASSEVA 323

Query: 340 SNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLK 399
           SN    A +  SA+ +       V+ A+  I  L NE+  T+     L   + KI Q+L 
Sbjct: 324 SNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIGQILD 383

Query: 400 VIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQ 459
           VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LASRTQ ST+EI  ++ A+  
Sbjct: 384 VIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIEAIRA 443

Query: 460 GVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAED 519
            V     S+  ++ + E+T  E+ Q+ E+L  I  ++  I DM IQ A+A E+QSAV  +
Sbjct: 444 SVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSAVIAE 503

Query: 520 INQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL 564
           +N N+  I  I  E  +  ++  S S  +      + +L+  FKL
Sbjct: 504 LNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFKL 548