Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  213 bits (541), Expect = 3e-59
 Identities = 137/356 (38%), Positives = 197/356 (55%), Gaps = 5/356 (1%)

Query: 210 MISAIGLSVV-GLVFTIIAVSVLVSRGI-APLQHVVSSLQAVAAGGGDLTARIKVESQDE 267
           M+S I L +V GLV  +I +S+ + R + A L+H+   +   +    DL+ R+ ++ +DE
Sbjct: 310 MVSVIVLMLVSGLV--VILLSLFIGRYLHASLRHLYHKVTE-SQKHYDLSVRVDLKGKDE 366

Query: 268 IGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAA 327
           IG +  AFN  M     ++  +R +   +  A+QE++         +     E D+V +A
Sbjct: 367 IGQLGSAFNHMMADFEKVIGMVRTNTQGLLTASQEMEGCARIMREDVALGHSEVDQVASA 426

Query: 328 VTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDL 387
           +TEMSAT +E+A N    ++A   AN +      EV    D I EL  E+   + A+ +L
Sbjct: 427 MTEMSATVQEIAQNAVQASEASAQANKEAKEGSLEVERTADSINELAQEIADAAQAINNL 486

Query: 388 SQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNST 447
            +    I  VL VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVRSLA R Q ST
Sbjct: 487 DEDIKGIVDVLGVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQTST 546

Query: 448 KEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTA 507
           ++I  M   L +G   AV++M   + + E + +ES +  E L  I   VS+I  M  Q A
Sbjct: 547 EDIRSMTERLERGAKIAVKAMESGRNKAEISVVESKRAGEELIRIVSEVSVIDSMNEQIA 606

Query: 508 SAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFK 563
           +A  +QSAV+E++NQN + I  I     E   +   ++ SL +    M  LV  FK
Sbjct: 607 AATHEQSAVSEEVNQNAMKISDIYRNTHEVSDRLSQLNESLLNDVSAMSELVSKFK 662