Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  436 bits (1120), Expect = e-126
 Identities = 230/555 (41%), Positives = 347/555 (62%), Gaps = 4/555 (0%)

Query: 10  LRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYLMMG 69
           LR + KLL+  ++PLI+    ++++ Y    ++L++ +  ++  L   +K +L+  + + 
Sbjct: 4   LRMKNKLLVFALLPLILSFLFLVSITYNLESNSLEENMSTFKASLYSERKAQLKDQVDIA 63

Query: 70  VTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYG 129
           +  V+       AG+      + L+ +RF + GYFF YD  G N  HA+KP LEG    G
Sbjct: 64  LDIVEHQLSLGTAGD----VNKALRNVRFGTAGYFFIYDFDGFNRFHAVKPALEGTAQIG 119

Query: 130 MKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYID 189
           M D NG  ++ GLIDA+++GDGF  + + KP +    PK+GYA  +P  DW+LGTG Y D
Sbjct: 120 MTDPNGKKIVVGLIDAARSGDGFFNYDYSKPGVTGLVPKIGYAATVPGKDWILGTGAYTD 179

Query: 190 DVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAV 249
           D+D QV  +R      + D+ +  +  ++V +  T + + V   R + P+ ++V +L+ +
Sbjct: 180 DIDAQVESYREVMTKHMNDKAMMILLFALVLVAITAVVMLVAAQRMVNPIHNMVQNLEDI 239

Query: 250 AAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQ 309
           A G GDLT R+ V+  DEI  + +AFN F+DKL  ++ D+  +   V++ A  +  QT+ 
Sbjct: 240 AKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAA 299

Query: 310 ASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDG 369
            + ++  H  ETD+VV A+TEMSATA EVA +T   A+A ++A   +  AQ+ V+ ++  
Sbjct: 300 MAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVDSSLHE 359

Query: 370 IGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGF 429
           +  L+ E++  +  +  L++Q+ KI  VL VIG IAEQTNLLALNAAIEAARAGEQGRGF
Sbjct: 360 VSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGF 419

Query: 430 AVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESL 489
           AVVADEVRSLASRTQ ST EI EML+ LH  VS AV SM  SQ+   ++   S  I +SL
Sbjct: 420 AVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSL 479

Query: 490 AGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLS 549
             ++ AV+ I+DM  Q A+AA +QS+V E+IN+N+ AIQ+IVNEL ++       S  L+
Sbjct: 480 GAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDTSQGLA 539

Query: 550 HSGQQMGTLVGHFKL 564
           + G+ + TLVG FK+
Sbjct: 540 NEGRNLDTLVGQFKV 554