Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  229 bits (584), Expect = 2e-64
 Identities = 152/480 (31%), Positives = 239/480 (49%), Gaps = 34/480 (7%)

Query: 91  QILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIA-----GLIDA 145
           ++LK+ + +  G+ +  D++G   LH+   ++   +L  +   N    +      GL   
Sbjct: 187 RLLKSFKIEDTGFVYLVDAKGDVKLHSDTSQIGKASLSSLYGGNVTRELLNKGDFGLTQT 246

Query: 146 SKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREAD 205
              G+  L  S                 Y+P  DW L   +         AE  A  E  
Sbjct: 247 ELDGETLLVAS----------------SYIPSMDWYLVAQV-------PRAEVFALLEES 283

Query: 206 LYDQMISAIGLSVVGLVFTIIAVSVLVSRGIA-PLQHVVSSLQAVAAGGGDLTARIKVES 264
            Y  ++  + ++        I +S  VS  ++ P+  V   LQ +  G GDL  R+ VE 
Sbjct: 284 AYQILVWTVLIAAA-----FIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEG 338

Query: 265 QDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKV 324
            DE+  +AK FN+F++K+   + ++  ++  +  AA+++  Q  Q          +T  V
Sbjct: 339 NDELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMV 398

Query: 325 VAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAV 384
           V A+ EM AT  E+A N    A   + A++  +  Q  V  A D I +L  +V Q    +
Sbjct: 399 VTAINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVI 458

Query: 385 GDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 444
             L+     I  +L VI  +++QTNLLALNAAIEAARAGE GRGFAVVA+EVR+LASRT 
Sbjct: 459 ESLATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTA 518

Query: 445 NSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGI 504
            ST E+ +M++ L    ++AV++M  S+ R ++      +   +L  IS+ +  I DM I
Sbjct: 519 ASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNI 578

Query: 505 QTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL 564
           Q A+A E+QS V EDIN+N+  I +I    SE+ +     S SL+    ++ TLV  FK+
Sbjct: 579 QVAAATEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638