Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  244 bits (622), Expect = 9e-69
 Identities = 151/396 (38%), Positives = 233/396 (58%), Gaps = 15/396 (3%)

Query: 168 KLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIA 227
           KL +   +P  DW L   + + D +T         EA L + +++ +GLS V L+ +++A
Sbjct: 238 KLVWGVDIPNTDWEL---VIVLDKETL--------EAPLTNLLLTQLGLSAVVLLLSVLA 286

Query: 228 VSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMT 287
           +S LV+  + PL  V  +L  +A G GDLT RI+V++QDE+G +A +FN F+   H L++
Sbjct: 287 ISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLIS 346

Query: 288 DIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQ 347
            IR  A  ++A A+   +    A  ++     E   V  AVTEM++   E+A+N  +TA 
Sbjct: 347 HIRHLAGELDADAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTAT 406

Query: 348 AIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQ 407
           A + + +     ++ VN     I  L +EV Q +  + DLS+ A  I+ +L  I  IAEQ
Sbjct: 407 AAQQSAASSFQGKELVNKTRSSINSLADEVTQATEVIEDLSRHAQSISSILATIQGIAEQ 466

Query: 408 TNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQS 467
           TNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RTQ+ST+E+   +  L +  +KAV  
Sbjct: 467 TNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSL 526

Query: 468 MNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAI 527
           M  SQ     +  ++    ++L  I++AV++I DM  Q A+AAE+Q+ V  +I QN VAI
Sbjct: 527 MESSQMLAGNSVEDANAAVKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAI 586

Query: 528 QQIVNELSESFK----QTESVSASLSHSGQQMGTLV 559
           + + +E++E+ K    Q +++ A  +    Q+ T +
Sbjct: 587 KDVTDEITEAAKSDLTQAQALKARANDLNAQVATFI 622