Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (602), Expect = 2e-66
 Identities = 161/474 (33%), Positives = 243/474 (51%), Gaps = 22/474 (4%)

Query: 91  QILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGD 150
           Q+L + + +  G+ +  D++G   LH   P   GK    +K     A I  L++ S    
Sbjct: 191 QLLDSFKIEETGFVYLVDAKGEVKLHP-DPSQIGKT--SLKSLYSAANIGSLLNRSD--- 244

Query: 151 GFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQM 210
               F+     I  +   +  + Y+P  DW L   +   +V      F   R+A +Y  +
Sbjct: 245 ----FNLIDTEIQGEKTFVA-SSYIPSMDWYLVAQVPEAEV------FALLRDA-VYQIL 292

Query: 211 ISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGD 270
           I  + +   G +   I V+  VSR   P+  V +  + +  G GDL  R+ V  +DEI  
Sbjct: 293 IWTL-IIAAGFIMLAIVVAGSVSR---PIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQ 348

Query: 271 VAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTE 330
           +A+ FN+F+ K+   + ++  ++  +  +A+++  Q  Q           T  VV A+ E
Sbjct: 349 LAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINE 408

Query: 331 MSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQ 390
           M AT  E+ASN    A A + A+++    Q  V  A D I +L ++V Q    +  L+  
Sbjct: 409 MGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATH 468

Query: 391 AAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEI 450
              I  +L VI  I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LASRT  ST E+
Sbjct: 469 TKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEV 528

Query: 451 GEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAA 510
             M++ L    S+AV +M  S+ R  +      +  +SL GISK + LI DM IQ A+A 
Sbjct: 529 QGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAAT 588

Query: 511 EQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFKL 564
           E+QS V EDIN+N+  I  I    + + +     S +L+    ++ TLV  FK+
Sbjct: 589 EEQSTVVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642