Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  250 bits (638), Expect = 1e-70
 Identities = 171/566 (30%), Positives = 280/566 (49%), Gaps = 28/566 (4%)

Query: 6   MLSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAY 65
           M++ LR  T   +L  + ++++ A +  V + S        ++   ++LI+ K  ++   
Sbjct: 1   MITFLRQFT---ILKRLMMMLVMAAIGTVCFASF------SIKEQYSNLIEQKWLQIDGQ 51

Query: 66  LMMGVTAVKPLYESDKAG------ENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIK 119
           L   + +V  +Y  D A       E Q  A  ++   R+   GYF   D       H   
Sbjct: 52  LG-SILSVIDVYRQDAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGES 110

Query: 120 PELEGKNLYGMKDENGVAVIAGLID-ASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKW 178
             + G +       NG   +  L+  A + G   L +    P       KL  A Y P+W
Sbjct: 111 ASMIGTSAQNFTLPNGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQW 170

Query: 179 DWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAP 238
            W L TG Y+ DV   + E        + D +I    +SV    F ++    + S    P
Sbjct: 171 GWTLITGAYLSDVKESLYEV-------MVDYLIIMFLISVPIFAFFLVLNHSITS----P 219

Query: 239 LQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEA 298
           L   + +L+ +A G GDL+ R+  + +DE+  +A AFN F  K+  ++  ++    +++ 
Sbjct: 220 LNDAIEALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDN 279

Query: 299 AAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAV 358
            A+ L     +++   +    ET  V  AV +M +T  E+ASNT   A A  S  SQ   
Sbjct: 280 DAKLLMLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQ 339

Query: 359 AQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIE 418
           ++  ++  +    +LV E+  + A    L Q + +I  +L VI  IAEQTNLLALNAAIE
Sbjct: 340 SKGVIDNTVRDTEKLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIE 399

Query: 419 AARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKT 478
           AARAG  GRGFAVVADEVR+LA+RTQ+ST EI ++++ +  GV   +QS + +Q + E+ 
Sbjct: 400 AARAGSHGRGFAVVADEVRALANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEEL 459

Query: 479 ALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESF 538
             ++ +  +++A I + ++ I DM  Q ASA E+QS V E+IN+N+  I ++     ++ 
Sbjct: 460 QAKAQEAGQAMAAILELIAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKAN 519

Query: 539 KQTESVSASLSHSGQQMGTLVGHFKL 564
           +     + SL    Q M   +G FK+
Sbjct: 520 ESNSRAAQSLQDISQDMSHTLGQFKI 545