Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  218 bits (554), Expect = 8e-61
 Identities = 138/368 (37%), Positives = 225/368 (61%), Gaps = 19/368 (5%)

Query: 208 DQMISAIG--LSVVGLVFTIIAV---SVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKV 262
           D M +++G  L +VGL  +I+AV   S+++   IAPL+ +   ++ +A+  GDLT  I+V
Sbjct: 345 DDMATSLGSILVIVGLAVSILAVVTISIVIRSVIAPLRLIQGRVENLASADGDLTQSIEV 404

Query: 263 ESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEA---AAQELDQQTSQASHKMDGHCL 319
           +S  E+  + K FN+F+ KL  L+++++A A   +    ++ ++ + T  + H+  G   
Sbjct: 405 DSHAELIALGKGFNSFIHKLKDLISELKALAGQTQEESLSSAKIAELTRDSVHRQYG--- 461

Query: 320 ETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQ 379
           E + VV AV EMSATA EVA  +  TA   E+ +  + ++++ +  A+D +  +  E  Q
Sbjct: 462 EIESVVTAVNEMSATALEVAKASEQTAAETEAMSRNVHLSEESLTKAMDYVTTMSQESMQ 521

Query: 380 TSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSL 439
              AV  +++ +  I+++L+VI  IA QTNLLALNAAIEAARAGEQGRGFAVVADEVR+L
Sbjct: 522 AKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRAL 581

Query: 440 ASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESV-QIKESLAGISKAVSL 498
           AS+TQ+ST +I  +++AL     K VQS +   ++G + A  +V Q +++L  ++  VS 
Sbjct: 582 ASKTQSSTDDISVLIDAL----QKEVQSASAIIDKGAERAQMAVSQTEQALTSLNSMVSQ 637

Query: 499 IHDMGIQT---ASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQM 555
           I ++  Q    A+AAE+QSAV E++N+N+  I    +EL+    + +  S  L+   +Q 
Sbjct: 638 IEEISAQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQ 697

Query: 556 GTLVGHFK 563
              +G  K
Sbjct: 698 HQQLGKLK 705