Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  444 bits (1141), Expect = e-129
 Identities = 243/559 (43%), Positives = 356/559 (63%), Gaps = 6/559 (1%)

Query: 7   LSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYL 66
           +S+L  R KLLLL++ PLI    +++ ++Y     +L +E+  +RT L+  +K++++   
Sbjct: 1   MSNLSLRNKLLLLSLFPLIFTLLVLITLSYYVEQESLAEEVVTFRTKLVGERKQQIKEAT 60

Query: 67  MMGVTAVK-PLYESDKAGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGK 125
            +    V   L   DK   NQA     L+ +RF S GYFF YDSQG N  HA+ P LEG+
Sbjct: 61  EIASGIVNYQLSLKDKGNVNQA-----LRDIRFGSAGYFFMYDSQGKNIFHALMPNLEGQ 115

Query: 126 NLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTG 185
           N   M D  G  +I GL+DA+K GDG   + + KP  N Q  K+ +   +P  DW+LGTG
Sbjct: 116 NKIDMTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNEQIEKISFVMMVPGTDWMLGTG 175

Query: 186 IYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSS 245
            YIDD++  V ++R      + ++ +  + +++V    T   + V   R + P++++  +
Sbjct: 176 AYIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADN 235

Query: 246 LQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQ 305
           L  +A G GDLT R+ V+ +DEI  + +AFN F+DKL  ++ D+ ++   V+ AA  +  
Sbjct: 236 LNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHD 295

Query: 306 QTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNL 365
           QT   S ++  H  ETD+VV A+TEMS+TA EVA NT   A+A ++A   +A AQ+ V+ 
Sbjct: 296 QTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDA 355

Query: 366 AIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQ 425
           +++ I  L+ ++N  + ++  LS+Q+ KI  VL VIG IAEQTNLLALNAAIEAARAGEQ
Sbjct: 356 SLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQ 415

Query: 426 GRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQI 485
           GRGFAVVADEVRSLASRTQ ST EI EML+ALH+ VS+AV++M+ SQ+   ++   S  I
Sbjct: 416 GRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAI 475

Query: 486 KESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVS 545
            ESL  ++ AV+ I+DM  Q A+AA +QS+V E+IN+N+ AIQ+IVNEL  S +    VS
Sbjct: 476 SESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVS 535

Query: 546 ASLSHSGQQMGTLVGHFKL 564
            ++S  G  +G LVG FK+
Sbjct: 536 QTVSQEGTNLGNLVGQFKI 554