Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  245 bits (625), Expect = 4e-69
 Identities = 153/401 (38%), Positives = 234/401 (58%), Gaps = 15/401 (3%)

Query: 163 NAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLV 222
           N    KL +   +P  DW L   + + D +T         EA L D +++  GLS V L+
Sbjct: 233 NEGRDKLVWGVDIPNTDWEL---VIVLDKETL--------EAPLTDLLLTQFGLSAVVLL 281

Query: 223 FTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKL 282
            +++A+S LV+  + PL  V  +L  +A G GDLT RI+V++QDE+G +A +FN F+   
Sbjct: 282 LSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQ 341

Query: 283 HPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNT 342
           H L++ IR  A+ ++A A+   +    A  ++     E   V  AVTEM++   E+A+N 
Sbjct: 342 HQLISHIRQLASELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANA 401

Query: 343 YSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIG 402
            +TA A + + +     ++ VN     I  L +EV Q +  + DLS+ A  I+ +L  I 
Sbjct: 402 ENTATAAQQSAASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQ 461

Query: 403 DIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVS 462
            IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RTQ+ST+E+   +  L +  +
Sbjct: 462 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTA 521

Query: 463 KAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQ 522
           KAV  M  SQ     +  ++    ++L  I++AV++I DM  Q A+AAE+Q+ V  +I Q
Sbjct: 522 KAVSLMESSQMLAGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQ 581

Query: 523 NLVAIQQIVNELSESFK----QTESVSASLSHSGQQMGTLV 559
           N VAI+ + +E++E+ K    Q +++ A  +    Q+ T +
Sbjct: 582 NTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATFI 622