Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  242 bits (617), Expect = 3e-68
 Identities = 177/567 (31%), Positives = 301/567 (53%), Gaps = 56/567 (9%)

Query: 12  SRTKLLLLTVIPLIVITALVMAVNYQS-----GLSTLQKELENYRTDLIDAKKKELQAYL 66
           +  K   LT +P +  + L++ +   S      L+     L N  T L +      +A+ 
Sbjct: 3   NNAKTSTLTALPSVFASILLIIIGISSYRGFAELNNTSSRLVN-NTKLAETFTNVREAFF 61

Query: 67  MMGVTAVKPLYESDKAGENQAQAKQILKAM-RFDSDGYFFAYDSQGVNTLHAIKPELEGK 125
            + +  +  ++ SD     Q   +Q+++ +  F++D     +  Q   T+  + P++E  
Sbjct: 62  ELRLATL--VHNSDAISLQQRNVRQLVEQLAEFNTD-----FMGQDARTIRTLLPQIEQY 114

Query: 126 -NLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGT 184
             LY  +          L  A +TG         +P + ++   LG     PK       
Sbjct: 115 VRLYQQE----------LAFAKQTGT--------EPELTSERGALG-----PK------- 144

Query: 185 GIYIDDVDTQVAEFRAQREADLYDQM---ISAIGLSVVGLVFTIIAVSVL----VSRGIA 237
              + +   Q+ +   QR  +L  Q    ++A    ++GL+   I  S+L    +SR + 
Sbjct: 145 ---VSNEINQLVKLITQRNHELGKQAEDKVNATEALLLGLILVAIVASLLSALFMSRRLV 201

Query: 238 PLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVE 297
            + H +  +    A G DLT + ++  Q+E+  +    +  +D L  +++DI  ++  + 
Sbjct: 202 NIVHQIKRVVEHLADG-DLTQKTQISGQNELCALGADLDRVIDHLRHMISDIAQASEHMS 260

Query: 298 AAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIA 357
               +L+ Q++  +H +  H +ETD+VV A+TEMSATA  VA +  S A+  + AN Q  
Sbjct: 261 DQIGQLNVQSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQAD 320

Query: 358 VAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAI 417
            ++K V  A + +  LV +V+  +  + ++++    I  +L VIGDIA+QTNLLALNAAI
Sbjct: 321 KSKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAI 380

Query: 418 EAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEK 477
           EAARAGEQGRGFAVVADEVR+LA+RTQ ST EI +ML  L  G + AV +M+ +++  + 
Sbjct: 381 EAARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQD 440

Query: 478 TALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSES 537
            A  +  + ESL  ++  V  I+ +  Q A+AAE+QSAV+E+IN+NL  I+++V EL++S
Sbjct: 441 AADTTTLVTESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQS 500

Query: 538 FKQTESVSASLSHSGQQMGTLVGHFKL 564
            K T + + SL+ + +Q+  +V HF+L
Sbjct: 501 GKATLNSATSLAATKEQLTGVVSHFRL 527