Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  446 bits (1146), Expect = e-129
 Identities = 244/558 (43%), Positives = 351/558 (62%), Gaps = 4/558 (0%)

Query: 7   LSSLRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYL 66
           +S+   R KLLLL + PLI+   ++M V+Y    S L  E+  +R  LI  +K +++   
Sbjct: 1   MSNFSLRNKLLLLALFPLILTFIVLMTVSYHVEQSALADEVTTFREKLIGERKTQIKEAT 60

Query: 67  MMGVTAVKPLYESDKAGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKN 126
            +    V+  Y+     + Q    Q L+ +RF S GYFF YDSQG N  HA+ P LEG+N
Sbjct: 61  QIAAGIVQ--YQLSL--KEQGNVNQALRDIRFGSSGYFFLYDSQGKNLFHAVMPNLEGQN 116

Query: 127 LYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGI 186
              M D  G  +I GL++A+K GDG   F + KP  N Q  K+GY+  +P  DW+LGTG 
Sbjct: 117 KIDMTDPRGTKIIVGLLNAAKNGDGNFSFYFQKPNTNEQIEKIGYSMMIPGTDWMLGTGA 176

Query: 187 YIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSL 246
           YIDD+D  V ++R      + D+  + + ++++    T   + V   R + P++++  +L
Sbjct: 177 YIDDIDAVVEDYRTTVTEQMIDKSYAILLIALLLAAITAPVILVTAQRMVTPIKNMADNL 236

Query: 247 QAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQ 306
             +A G GDLT R+ V+  DEI  + ++FN F+DKL  ++ D+  +   V+ AA  +  Q
Sbjct: 237 NDIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAANAIHDQ 296

Query: 307 TSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLA 366
           T   S ++  H  ETD+VV A+TEMSATA EVA NT   A+A  +A   +A AQ+ V+ +
Sbjct: 297 TKVMSRQLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQRCVDAS 356

Query: 367 IDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQG 426
           ++ I  L+ ++N  ++ +  LS+Q+ KI  VL VIG IAEQTNLLALNAAIEAARAGEQG
Sbjct: 357 LEEISALMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQG 416

Query: 427 RGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIK 486
           RGFAVVADEVR+LASRTQ+ST EI EML+ LH+ VS AV++M  SQ+   ++   S  I 
Sbjct: 417 RGFAVVADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTMEESQQSCIRSVDSSRAIS 476

Query: 487 ESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSA 546
           ESL  ++ AV+ I+DM  Q A+AA +QS+V E+IN+N+ AIQ+IVNEL  S ++  SVS 
Sbjct: 477 ESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLHSSEEAASVSQ 536

Query: 547 SLSHSGQQMGTLVGHFKL 564
           ++S  G  +G LVG FK+
Sbjct: 537 TVSQEGLNLGKLVGQFKI 554