Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  269 bits (687), Expect = 2e-76
 Identities = 174/545 (31%), Positives = 287/545 (52%), Gaps = 26/545 (4%)

Query: 22  IPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYLMMGVTAVKPLYESDK 81
           + L +ITAL+ A      L  L   +   +++L+  ++  L A L + ++ ++ L ++  
Sbjct: 13  LALQLITALIGA------LILLTLSVTTLKSNLMAEREARLNAVLSLALSRIQALQQNLP 66

Query: 82  AGENQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAG 141
             + Q  AK++L  MRFD D Y F  D      +H +KPEL  +    M +         
Sbjct: 67  LEQAQQAAKEMLNNMRFDGDNYLFVIDETRHIIVHPVKPELVSQQ---MGNNGAEQYWFS 123

Query: 142 LIDASKTGD-GFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRA 200
           +++  + G  G L + W       +A K+        W W+LG+GI + D++  +     
Sbjct: 124 MVELGRNGQQGVLQYPWVTGN-GKKAQKMSLVMGFKPWGWILGSGILLQDIENTI----- 177

Query: 201 QREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIA-PLQHVVSSLQAVAAGGGDLTAR 259
                 + + +   G +++ L+  + A+  ++SR I  PL  V +++Q +A G  +LT +
Sbjct: 178 ------WHEYVLMGGTTLI-LILLMAALGYIISRSIVQPLDQVNNAMQIIATG--NLTPQ 228

Query: 260 IKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCL 319
           + V  +DE+  +A   N  M  +   + +   SA+ V  AA  +     + +  ++    
Sbjct: 229 LAVTGKDELAALAHNINQSMASIRTALAEANHSADNVSQAASRIASTAEETNQAVNNQRD 288

Query: 320 ETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQ 379
           +  ++  A+ EMSAT  +VA+N  STA+  + A  +  +  K+V+ ++DGI  L  EV Q
Sbjct: 289 QLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLGDKDVHASVDGIHALAKEVEQ 348

Query: 380 TSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSL 439
            +  V  L ++  +I++V  VI  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR L
Sbjct: 349 ATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRQL 408

Query: 440 ASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLI 499
           ASRT+ ST+EI   ++ L Q    A  +M+ S++  EK+  +S +    L+ I   +  +
Sbjct: 409 ASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAEKSVDQSTKAGNDLSLIVTHIKHV 468

Query: 500 HDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLV 559
            DM  Q A+AAE+QSAVAE++N+N+  I     E+SES       S SL+     +   +
Sbjct: 469 SDMATQIATAAEEQSAVAEEMNRNVCGINSSALEVSESATYLAQESESLAELSLNLNNKL 528

Query: 560 GHFKL 564
             FKL
Sbjct: 529 AAFKL 533