Pairwise Alignments

Query, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  251 bits (642), Expect = 4e-71
 Identities = 158/489 (32%), Positives = 255/489 (52%), Gaps = 14/489 (2%)

Query: 79  SDKAGENQAQ--AKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGV 136
           S K  E +AQ  A  ++   R+   GYF   D       H  + +L G +    K +NG 
Sbjct: 68  SGKLSEAEAQQAAANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIGTSALNFKLQNGT 127

Query: 137 AVIAGLID-ASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQV 195
             +A ++  A + G   L +    P       KL  A Y P+W W L TG Y+ DV   +
Sbjct: 128 NPLATMLPLARQNGKTMLEYPIANPVSKNIEDKLVEARYYPEWGWTLITGAYLSDVKQSL 187

Query: 196 AEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGD 255
                  +A + D +I    +SV    F ++    + S    PL   + +L+ +A G GD
Sbjct: 188 -------KAVIIDYLIIMFLISVPIFAFFLVLNHSITS----PLNDAIDALEDIAQGEGD 236

Query: 256 LTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMD 315
           L+ R+  + +DE+  +A AFN F  K+  ++  ++    +++  A++L     +++   +
Sbjct: 237 LSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAE 296

Query: 316 GHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVN 375
               ET  V  AV +M +T  E+ASNT   A A  S  +Q   +Q  ++  +    +LV 
Sbjct: 297 HIHRETGSVATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQ 356

Query: 376 EVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 435
           E+  +      L Q +A+I  +L VI  IAEQTNLLALNAAIEAARAG  GRGFAVVADE
Sbjct: 357 ELRASEVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADE 416

Query: 436 VRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKA 495
           VR+LA+RTQ+ST EI ++++ +  GV+  ++S + +Q + ++   ++ +   ++A I + 
Sbjct: 417 VRALANRTQDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQL 476

Query: 496 VSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQM 555
           ++ I DM  Q ASA E+QS V E+IN+N+  I ++     ++ +     + SL    Q M
Sbjct: 477 IAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQSLQDISQDM 536

Query: 556 GTLVGHFKL 564
              +G FK+
Sbjct: 537 SHTLGQFKI 545