Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 718 a.a., polyribonucleotide nucleotidyltransferase from Synechocystis sp000284455 PCC 6803

 Score = 57.8 bits (138), Expect = 6e-13
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 29/221 (13%)

Query: 24  AEGSVLVEFGNTKVLCNASIEEG------VPRWLKGQGKGWVTAEYGMLPRATHSRTRRE 77
           A GSVL++ G+T VL  A+  +G      +P  +  +G+ +     G +P       RRE
Sbjct: 26  AGGSVLIQSGDTAVLVTATRAKGRDGIDFLPLTVDYEGRLYAA---GRIPGGF---LRRE 79

Query: 78  ATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVAL 137
              G+   +   I RLI R LR +       E+ I      +  +      ++TGASVA+
Sbjct: 80  ---GRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPDVLAVTGASVAV 136

Query: 138 ADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKM 197
                       L + P KG +AAV VG++G+D + +  Y E    D D+ V  T  G +
Sbjct: 137 I-----------LAQIPFKGPMAAVRVGLVGDDFIINPTYREVHNGDLDLVVAGTPAG-I 184

Query: 198 IEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238
           + ++  A   P   + ++E +    + + D++  Q+  + D
Sbjct: 185 VMVEAGANQLP--EQDIIEAIDFGYEAVQDLINAQRELMTD 223



 Score = 44.7 bits (104), Expect = 5e-09
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 37/211 (17%)

Query: 1   MRPDNRAADQVRPIKITRHYTAY-AEGSVLVEFGNTKVLCNASI-----EEGVPRWLKGQ 54
           +R D R  +QVRPI     +      GS L   G T+VL  A++      + +   L  +
Sbjct: 323 VRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLATLGSPGDAQDLADDLHPE 382

Query: 55  GKGWVTAEYGMLP------RATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMG 108
            +      Y   P      R   S  RRE  +G           L  R++  V+  +   
Sbjct: 383 DEKRYLHHYNFPPYSVGEARPMRSPGRREIGHGA----------LAERAIIPVLPPQEDF 432

Query: 109 EIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILG 168
             ++ V  +V+ ++G T   S+ G+++AL DA             P+K  V+  ++G++ 
Sbjct: 433 PYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGV-----------PIKKPVSGAAMGLIK 481

Query: 169 ED----VLCDLEYVEDSAADTDMNVVMTEEG 195
           E     +L D++ +ED   D D  V  T+ G
Sbjct: 482 EGDEIRILTDIQGIEDFLGDMDFKVAGTDSG 512