Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 716 a.a., polynucleotide phosphorylase/polyadenylase from Synechococcus elongatus PCC 7942

 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 40/212 (18%)

Query: 1   MRPDNRAADQVRPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRW------LKG 53
           +R D R  DQVRPI            GS L + G T+VL  A++  G P        L  
Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATL--GTPGDAQELDDLHP 379

Query: 54  QGKGWVTAEYGMLP------RATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAM 107
             +      Y M P      R   S  RRE  +G           L  R+L  V+  +  
Sbjct: 380 DTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGA----------LAERALLPVLPSKEE 429

Query: 108 GEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL 167
              +I V  +V+ ++G T   S+ G+++AL DA             P+K  V+  ++G++
Sbjct: 430 FPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGV-----------PIKKPVSGAAMGLI 478

Query: 168 GED----VLCDLEYVEDSAADTDMNVVMTEEG 195
            E     VL D++ +ED   D D  V  T++G
Sbjct: 479 REGDEYRVLTDIQGIEDFLGDMDFKVAGTDQG 510



 Score = 45.1 bits (105), Expect = 4e-09
 Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 29/225 (12%)

Query: 20  YTAYAEGSVLVEFGNTKVLCNAS---IEEGV---PRWLKGQGKGWVTAEYGMLPRATHSR 73
           +   A GSVL+  G+T VL  A+     EG+   P  +  + + +     G +P      
Sbjct: 22  FAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAA---GRIPGGF--- 75

Query: 74  TRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGGTRTASITGA 133
            RRE   G+   R     RLI R LR +       ++ +      +         ++TGA
Sbjct: 76  LRRE---GRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDVLAVTGA 132

Query: 134 SVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTE 193
           S+A   A           K P  G +AAV VG++G+D + +  Y E    D D+ V  T 
Sbjct: 133 SIATLVA-----------KIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTP 181

Query: 194 EGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238
            G +I ++  A   P     ++E +    + + +++  Q++ L +
Sbjct: 182 AG-VIMVEAGANQLP--EADVIEAIDFGYEAVQELIKAQQSLLAE 223