Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 708 a.a., 3' exoribonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56
           +R D R    VRPI+I       A GS L   G T+ L   ++    +E +   L+G+ +
Sbjct: 314 LRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYR 373

Query: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116
                 Y   P +     R     G  G R +   +L  R++  ++  +      + V  
Sbjct: 374 ENFMLHYNFPPYSVGEAGRM----GSPGRREIGHGKLAWRAIHPMMPAKDAFPYTVRVVS 429

Query: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172
           ++ +++G +  A++ G S+AL DA             P+K  VA +++G++ ED    VL
Sbjct: 430 EITESNGSSSMATVCGTSLALMDAGV-----------PLKNAVAGIAMGLIKEDERFAVL 478

Query: 173 CDLEYVEDSAADTDMNVVMTEEG 195
            D+   ED   D D  V  T  G
Sbjct: 479 SDILGDEDHLGDMDFKVAGTANG 501



 Score = 38.5 bits (88), Expect = 4e-07
 Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 37/216 (17%)

Query: 24  AEGSVLVEFGNTKVLCNA------SIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRRE 77
           A+G+V+   G+T VLC A      S  +  P  +  Q K   T   G +P     R    
Sbjct: 29  ADGAVMASLGDTTVLCTAVGAKTKSKFDFFPLTVNYQEK---TFAAGKIPGGFFKR---- 81

Query: 78  ATNGKQGGRTMEIQRLIARSLRA--VVDLEAMGEIMITVDCDVIQADGGTRTASITGASV 135
              G+   +   + RLI R +R   V   +   +++ TV C     +      +I GAS 
Sbjct: 82  --EGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCH--DLENNPDIVAIVGASA 137

Query: 136 ALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVEDSAADT--DMNVVMTE 193
           AL            L   P  G + A  VG++  D    L    D  AD+  D+ V  T 
Sbjct: 138 ALT-----------LSGLPFLGPIGAARVGLI--DGAFVLNPTRDQMADSVLDLVVAGTR 184

Query: 194 EGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIV 229
           EG ++     +E    S +Q+L+ +    +G   ++
Sbjct: 185 EGVLMV---ESEAHELSEQQMLDAVMFGHEGYQPVI 217