Pairwise Alignments

Query, 238 a.a., ribonuclease PH from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., polynucleotide phosphorylase/polyadenylase (RefSeq) from Shewanella loihica PV-4

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 55/208 (26%), Positives = 82/208 (39%), Gaps = 35/208 (16%)

Query: 2   RPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL--CNASIEEGVPR--WLKGQGKG 57
           R D R  D VR + +         GS L   G T+ L  C    E    +   + G+   
Sbjct: 314 RIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGEQTS 373

Query: 58  WVTAEYGMLPRA------THSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIM 111
                Y   P +        S  RRE  +GK          L  R + AV+         
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGK----------LAWRGIHAVMPTAEEFPYS 423

Query: 112 ITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GE 169
           I V  ++ +++G +  AS+ G S+AL DA             P+K  VA +++G++  G+
Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGV-----------PIKTSVAGIAMGLVKEGD 472

Query: 170 D--VLCDLEYVEDSAADTDMNVVMTEEG 195
           D  VL D+   ED   D D  V  T +G
Sbjct: 473 DFVVLSDILGDEDHLGDMDFKVAGTRDG 500