Pairwise Alignments

Query, 653 a.a., Fe(3+)-hydroxamate ABC transporter permease FhuB from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., transport system permease protein (RefSeq) from Shewanella loihica PV-4

 Score =  149 bits (377), Expect = 2e-40
 Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 8/278 (2%)

Query: 381 LRWPRMLTALFAGVGLAIAGTLLQRLIYNPLASPDILGVSSGATFALVFASLFL---GQS 437
           LR PR+L A  AG GLA+AG +LQ +  NPLA P + G+SSGA+   V     L   G +
Sbjct: 71  LRLPRILLAFIAGFGLALAGAVLQTVTRNPLADPYLFGISSGASLGAVVVITLLGGVGGA 130

Query: 438 LQSTHW-MTALLG-SAAVLVALLLLGRRHHYAPSSLILTGIAITALLEALVQFTL-AKGT 494
           L S    + A +G S AVL+ L L GR  +     ++L+G+AI+ L  AL    L   G 
Sbjct: 131 LASVGLPLGAFIGASLAVLMVLALCGRDLNTQIERMLLSGVAISFLFGALASLMLYFSGP 190

Query: 495 GDSYQILLWLSGSTYRATGEQALLLSVGVVGLTLLALGLSRWLTLISIGRGFASARGLSA 554
             +  +L W  GS  +A+ +   L  + V+  + + L L R +  I  G   A   G+  
Sbjct: 191 QSAASVLFWSLGSFAKASWQMLWLPWLLVLAASAILLLLKRQILAIQAGDETAHTLGIRV 250

Query: 555 SRASLVLLILVALLCALVTATMGPVSFVGLIAPHMAMMLGAQRAPSQLLLAALVGGTLML 614
            R  LV L+L +L+ A++ A  G + FVGL+ PHM  +L   R    LLL ALVGG  M+
Sbjct: 251 QRLRLVSLLLCSLITAVLVANCGGIGFVGLMVPHMVRLLLPGR--FALLLTALVGGLFMI 308

Query: 615 WADWLGQALLFPAQIAAGTLVAIIGGSYFLLLLLSQRA 652
           W D L + LL   ++  G + A+IG  +FL +L  +R+
Sbjct: 309 WVDVLARCLLSYQELPVGIITAVIGSLFFLFILGGKRS 346



 Score =  114 bits (284), Expect = 9e-30
 Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 20/319 (6%)

Query: 9   LGALTLLLALVSLQWGH-NLTLNEQWQLVLGHQAAQSFAQVN---FIYAQLPRAVMAIVV 64
           LG LTL   ++++ +G   + + E  +++L   +      V     I  +LPR ++A + 
Sbjct: 23  LGLLTLATPVLAVSFGAAQIGVAEVLEVLLAKLSGADPGGVTARILIELRLPRILLAFIA 82

Query: 65  GAVLGLVGSLMQQLTQNRLTSPLTLGTSSGAWLGLIIVNIWFSDWVADYSA-----LAAM 119
           G  L L G+++Q +T+N L  P   G SSGA LG ++V I     V    A     L A 
Sbjct: 83  GFGLALAGAVLQTVTRNPLADPYLFGISSGASLGAVVV-ITLLGGVGGALASVGLPLGAF 141

Query: 120 AGALLAFALIISIAGLRNLTGLP-LVVSGMVVNILLGSIATALVLLN-EEFAQNVFMWGA 177
            GA LA  +++++ G    T +  +++SG+ ++ L G++A+ ++  +  + A +V  W  
Sbjct: 142 IGASLAVLMVLALCGRDLNTQIERMLLSGVAISFLFGALASLMLYFSGPQSAASVLFWSL 201

Query: 178 GDLAQNGWE--WLTWLLPRLALVFPLLLFAPRVLTLLRLGHEGAAARGLAVLPAFLFLMA 235
           G  A+  W+  WL WLL   A    +LL   R +  ++ G E A   G+ V    L  + 
Sbjct: 202 GSFAKASWQMLWLPWLLVLAASA--ILLLLKRQILAIQAGDETAHTLGIRVQRLRLVSLL 259

Query: 236 GGIWLVSASITAVGVIGFIGLLTPNIARSLGARTTKMELYSSALLGALLLLATDMLAMGL 295
               + +  +   G IGF+GL+ P++ R L     +  L  +AL+G L ++  D+LA  L
Sbjct: 260 LCSLITAVLVANCGGIGFVGLMVPHMVRLL--LPGRFALLLTALVGGLFMIWVDVLARCL 317

Query: 296 SVWAEEVVPSGITAAVIGA 314
             + E  +P GI  AVIG+
Sbjct: 318 LSYQE--LPVGIITAVIGS 334