Pairwise Alignments

Query, 653 a.a., Fe(3+)-hydroxamate ABC transporter permease FhuB from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (354), Expect = 8e-38
 Identities = 97/302 (32%), Positives = 152/302 (50%), Gaps = 28/302 (9%)

Query: 372 ALPSEFQWPLRWPRMLTALFAGVGLAIAGTLLQRLIYNPLASPDILGVSSGATF-ALVFA 430
           A+       LR PR+L A  AG GL++AG++LQ +  NPLA P + G+SSGA+F A+V  
Sbjct: 74  AMTDRIVMELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVML 133

Query: 431 SLFLG-------------------QSLQSTHWMTALLG-----SAAVLVALLLLGRRHHY 466
           +LF G                   + L    W +   G     S +VL+ L L G   + 
Sbjct: 134 TLFSGSGFFANAGVIANSGIFSGAEILAGLQWFSLPFGAFIGASLSVLIVLALSGLGLNS 193

Query: 467 APSSLILTGIAITALLEALVQFTLAKGTGD-SYQILLWLSGSTYRATGEQALLLSVGVVG 525
               ++L+G+A + +  AL    L   +   +  +L W  GS  +A+    +L ++ V+ 
Sbjct: 194 QVERMLLSGVATSFMFGALTSLLLYFASPQATASVLFWSLGSFAKASWSLLILPTIVVLV 253

Query: 526 LTLLALGLSRWLTLISIGRGFASARGLSASRASLVLLILVALLCALVTATMGPVSFVGLI 585
              + LG  R +  +  G   A   G++  +  L +L+L +L+ A++ AT G + FVGL+
Sbjct: 254 SFFIILGWKRQIMALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGLM 313

Query: 586 APHMAMMLGAQRAPSQLLLAALVGGTLMLWADWLGQALLFPAQIAAGTLVAIIGGSYFLL 645
            PH   +L   R P  +LL ALVGG  M+W D L + LL   ++  G + A IG  +FLL
Sbjct: 314 IPHTVRLLFPGRQP--ILLTALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFLL 371

Query: 646 LL 647
           +L
Sbjct: 372 IL 373



 Score =  100 bits (249), Expect = 1e-25
 Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 36/349 (10%)

Query: 6   LTGLGALTLLLALVSLQWGHNLTLNEQWQLVLGHQAAQSFAQVNFIYAQL--PRAVMAIV 63
           LT + A +   A +S     N+ +++  QL +G  A  + A  + I  +L  PR ++A V
Sbjct: 34  LTPIAAASFGAANISFLDVFNVFIDKFSQLFMGENAPSTAAMTDRIVMELRLPRILLAFV 93

Query: 64  VGAVLGLVGSLMQQLTQNRLTSPLTLGTSSGAWLGLIIVNIWF--SDWVADYSALA---- 117
            GA L L GS++Q +T+N L  P   G SSGA  G +++   F  S + A+   +A    
Sbjct: 94  AGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVMLTLFSGSGFFANAGVIANSGI 153

Query: 118 ------------------AMAGALLAFALIISIAGL-RNLTGLPLVVSGMVVNILLGSIA 158
                             A  GA L+  ++++++GL  N     +++SG+  + + G++ 
Sbjct: 154 FSGAEILAGLQWFSLPFGAFIGASLSVLIVLALSGLGLNSQVERMLLSGVATSFMFGALT 213

Query: 159 TALV-LLNEEFAQNVFMWGAGDLAQNGWEWLTWLLPRLALV--FPLLLFAPRVLTLLRLG 215
           + L+   + +   +V  W  G  A+  W  L  +LP + ++  F ++L   R +  L+ G
Sbjct: 214 SLLLYFASPQATASVLFWSLGSFAKASWSLL--ILPTIVVLVSFFIILGWKRQIMALQAG 271

Query: 216 HEGAAARGLAVLPAFLFLMAGGIWLVSASITAVGVIGFIGLLTPNIARSLGARTTKMELY 275
            E A   G+ V    L ++     + +  +   G IGF+GL+ P+  R L     +  + 
Sbjct: 272 DETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGLMIPHTVRLL--FPGRQPIL 329

Query: 276 SSALLGALLLLATDMLAMGLSVWAEEVVPSGITAAVIGAPALIWFSRRQ 324
            +AL+G L ++  D+LA  L     + +P GI  A IG+   +   RR+
Sbjct: 330 LTALVGGLFMVWIDVLARCL--LGNQELPVGIITASIGSFFFLLILRRR 376