Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  620 bits (1599), Expect = 0.0
 Identities = 315/607 (51%), Positives = 415/607 (68%)

Query: 3   MFQWFEKLTEPFPAQEPQTPPKSLVAFCRYYTQGFEKPLLLMSLLSACVAMAEVTLVRYM 62
           +F+ FE L + F       PP  ++ F  YY +       ++ ++    A+ EV L  Y+
Sbjct: 2   VFRRFETLIDIFRDAPSSAPPNRVLPFYTYYLKQVWPSFAVLLVVGLIGALIEVALFSYL 61

Query: 63  GEIVDILSTQERHQFWEMHGERLWTMAALVLVVMPILALVHSMLLHQTILGNYPMSIRWS 122
             I+D+        F+++HG  L  MA + LV  PI   +H +L+HQT+       IRW 
Sbjct: 62  SRIIDLTQGTPNVDFFKVHGLELAWMAVVALVFRPIFVALHDLLVHQTLSPGMTSLIRWQ 121

Query: 123 THRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLVDLSVYIAVYMVSMLVMIAEA 182
            H Y+LKQS+ FFQ DFAGR+A ++MQ  NS+R++ ++ VD   ++ +Y +S LV+ AEA
Sbjct: 122 NHSYVLKQSLNFFQNDFAGRIAQRIMQTGNSLRDSAVQAVDALWHVLIYAISSLVLFAEA 181

Query: 183 DKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANAQSQMTGRIVDTYTNITTVKLFSHS 242
           D  L++P+L+W+  YI    YFVPR+K  S   ++A+S++ GRIVD YTNITT+KLF+H+
Sbjct: 182 DWRLMIPLLMWIAAYIGALCYFVPRVKERSVVSSDARSKLMGRIVDGYTNITTLKLFAHT 241

Query: 243 QRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDLINYLLLFSIAALSIQLWLAETVTVGV 302
             E  YA+  +++         R +TS+   +  +N LL+     L++ LW    ++VG 
Sbjct: 242 NFEQQYAREAIQEQTEKAQLAGRVVTSMDVVITSMNGLLIVGTTGLALWLWTQSLISVGA 301

Query: 303 IAIGITIALRMQGMSKWIMWEIRALFESVGTVIDSMNTIANPVEIEDRPQAKSLQVKFGE 362
           IA+   + +R+  MS WIMW +  +FE++G V D + TIA PV + DR QAK L V  GE
Sbjct: 302 IALATGLVIRIVNMSGWIMWVVNGIFENIGMVQDGLQTIAQPVSVTDRDQAKPLAVARGE 361

Query: 363 LSFSQVRFGYSAQKTVFDDLNLVIQAGEKVGIVGRSGAGKSTLVNLLLRFYDVQSGQIRI 422
           + F  V F Y  +  V  DLNL+I+ GEK+G++G SGAGKSTLVNLLLR YDVQ G+I I
Sbjct: 362 VRFEHVDFHYGKKSGVIGDLNLIIKPGEKIGLIGPSGAGKSTLVNLLLRLYDVQGGRILI 421

Query: 423 DGQDISHVSQESLRRHIGMITQDTSLLHRSIRDNILYGNPDADQAAIEEAARQAHAHDFI 482
           DGQDI+ V QESLR  IGMITQDTSLLHRSIRDN+LYG PDA  A + EA R+A A +FI
Sbjct: 422 DGQDIAEVGQESLRERIGMITQDTSLLHRSIRDNLLYGKPDATDAQLWEAVRKARADEFI 481

Query: 483 QELQDEQGRTGYDVQVGERGVKLSGGQRQRIAIARVLLKNAPILIMDEATSALDSEVESA 542
             L D +GRTG+D  VGERGVKLSGGQRQRIAIARVLLK+APILIMDEATSALDSEVE+A
Sbjct: 482 PLLSDAEGRTGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILIMDEATSALDSEVEAA 541

Query: 543 IQENLHTLMAGKTVIAIAHRLSTIAAMDRLIVMDEGKIVEQGTHQELLAHKGIYAQLWAH 602
           IQE+L TLM GKTVIAIAHRLSTIA MDRL+V++ G+I E G+H ELLAH G+YA+LW H
Sbjct: 542 IQESLETLMQGKTVIAIAHRLSTIARMDRLVVLENGRIAETGSHAELLAHGGLYARLWQH 601

Query: 603 QTGGFIG 609
           QTGGF+G
Sbjct: 602 QTGGFVG 608