Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC-type multidrug transport system, ATPase and permease components from Pseudomonas stutzeri RCH2

 Score =  295 bits (756), Expect = 3e-84
 Identities = 180/494 (36%), Positives = 269/494 (54%), Gaps = 7/494 (1%)

Query: 117 MSIRWSTHRYLLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLVDLSVYIAVYMVSML 176
           + IR    ++L    + +F   FAG +  ++     +       L    V   V  +  +
Sbjct: 110 VDIRVDLFKHLTGHPMRYFTEHFAGSLGNRISAVGQAAGAIYGGLAWKIVPPIVDFLGAV 169

Query: 177 VMIAEADKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANAQSQMTGRIVDTYTNITTV 236
           V++   D  + V +++++     +   F  R +      A   +++ G +VD  +N+ T+
Sbjct: 170 VVLLTVDVRMAVALILFVAIVAVLITGFGIRGRYKHQRFAAQSARVGGELVDAVSNVWTI 229

Query: 237 KLFSHSQRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDLINYLLLFSIAALSIQLWLAE 296
           K FS   RE       +        R    L       D+   ++   +   +IQLW+  
Sbjct: 230 KAFSARDREAERLAHEIGFEARAQRRSWMYLEKARVMHDICLSVMAGGMLIWAIQLWVGG 289

Query: 297 TVTVGVIAIGITIALRMQGMSKWIMWEIRALFESVGTVIDSMNTIANPVEIEDRPQAKSL 356
            VT G + +   +  R+   S+ +   +    + +G + D++  I  P  ++D      L
Sbjct: 290 EVTAGDVVLVSALTFRILHGSRDLALALVDATQQIGAIDDTLRIIVQPHGLDDSDN--QL 347

Query: 357 QVKFGELSFSQVRFGYSAQKTVFDDLNLVIQAGEKVGIVGRSGAGKSTLVNLLLRFYDVQ 416
            +  G+++F ++ F Y  +  VF+ L+L I AG+KVG+VG SGAGKSTL+NL+ R  DVQ
Sbjct: 348 MLAEGDITFERIGFSYPDRGAVFEGLDLHIPAGQKVGVVGSSGAGKSTLINLIQRLDDVQ 407

Query: 417 SGQIRIDGQDISHVSQESLRRHIGMITQDTSLLHRSIRDNILYGNPDADQAAIEEAARQA 476
            G+I IDGQDI  VSQ+SLR  I ++ Q+T+L +RSIR+NI YG PDA    +  AAR A
Sbjct: 408 DGRILIDGQDIRSVSQDSLREKIAVVPQETALFNRSIRENIRYGRPDASDEEVVAAARSA 467

Query: 477 HAHDFIQELQDEQGRTGYDVQVGERGVKLSGGQRQRIAIARVLLKNAPILIMDEATSALD 536
               FI+EL       GYD  VGERGV LSGGQRQR+ IAR  LK+APILI+DEATSALD
Sbjct: 468 FCDGFIRELPQ-----GYDTLVGERGVMLSGGQRQRLGIARAFLKDAPILILDEATSALD 522

Query: 537 SEVESAIQENLHTLMAGKTVIAIAHRLSTIAAMDRLIVMDEGKIVEQGTHQELLAHKGIY 596
           ++ E  IQ  L+ L+  +TV+A+AHRLST+A+ DR+IV+ +G+IVE G  QEL    G +
Sbjct: 523 TQSEGEIQAALNNLVHNRTVVAVAHRLSTLASFDRIIVLRDGRIVEDGPPQELRRQGGEF 582

Query: 597 AQLWAHQTGGFIGE 610
             LW  Q  GF  E
Sbjct: 583 DALWRMQAEGFAQE 596