Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  236 bits (601), Expect = 5e-66
 Identities = 164/485 (33%), Positives = 258/485 (53%), Gaps = 20/485 (4%)

Query: 127 LLKQSIGFFQRDFAGRVATKVMQNANSVRETVLKLVDLSVYIAVYMVSMLVMIAEADKIL 186
           LLK  + +F+R   G ++++V Q    +R  +      +V  A++ V  ++++      L
Sbjct: 524 LLKLPLRYFERRPVGELSSRV-QELEKIRSFLTGTALTTVMDAMFSVIYILVMLVYSWFL 582

Query: 187 VVPILVWLLFYIAIQVYFVPRLKTISTDQANAQSQMTGRIVDTYTNITTVKLFSHSQRET 246
            +  L  +  ++AI  +  P ++    ++A   ++   ++V+  + I TVK  +   +  
Sbjct: 583 TLVALSTVPIFVAITFFASPVVRRQLREKAERNAETQSQLVEVLSGIQTVKAQNIELKAR 642

Query: 247 TYAKSGMKQFLHTVYRQMRTLTSLLYSVDLINYLLLFSIAALSIQLWLAETVTVG-VIAI 305
              +    +++   +R + T T+     +  N L    +  + + L     +++G +IA 
Sbjct: 643 WQWQERYARYIAAGFRNINTSTAASSLTNFFNQLSGLLVLWVGVYLVFDNQLSLGQLIAF 702

Query: 306 GITIALRMQGMSK----WIMWEIRAL-FESVGTVIDSMNTIANPVEIEDRPQAK-SLQVK 359
            I      Q + +    W  ++  AL  E +  ++D+      P E +D  Q K  + + 
Sbjct: 703 RIISGYVTQPLLRLAQLWQNFQETALSLERLADIVDT------PQESDDDDQGKIPMPMI 756

Query: 360 FGELSFSQVRFGYSAQKTV-FDDLNLVIQAGEKVGIVGRSGAGKSTLVNLLLRFYDVQSG 418
            G++ F  + F +  Q  +   ++ L I AGE VGIVG+SG+GKSTL+ LL R Y    G
Sbjct: 757 NGKVEFRNLSFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYSPLEG 816

Query: 419 QIRIDGQDISHVSQESLRRHIGMITQDTSLLHRSIRDNILYGNPDADQAAIEEAARQAHA 478
           +I IDG DIS V   SLRR IG++ QD+ L   ++ +NI    P+A    I  AA+ A A
Sbjct: 817 EILIDGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAKAAGA 876

Query: 479 HDFIQELQDEQGRTGYDVQVGERGVKLSGGQRQRIAIARVLLKNAPILIMDEATSALDSE 538
           HDFI  L       GY+ +VGERG  LSGGQRQRIAIAR +L+N  +LI+DEATSALD +
Sbjct: 877 HDFIMTLP-----LGYNTRVGERGGALSGGQRQRIAIARTVLQNPQLLILDEATSALDYD 931

Query: 539 VESAIQENLHTLMAGKTVIAIAHRLSTIAAMDRLIVMDEGKIVEQGTHQELLAHKGIYAQ 598
            E  +  NL     GKTV  I HRLST+   DR+IVMD+G +VEQG+H EL+  +G Y  
Sbjct: 932 TERQVSINLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELMELRGRYFC 991

Query: 599 LWAHQ 603
           L+  Q
Sbjct: 992 LYRQQ 996